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scnpilot_solids1_trim150_scaffold_2714

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2714_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(49..798)
DNA (750bp) protein (250aa)
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Triosephosphate isomerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WXG2_9GAMM
scnpilot_solids1_trim150_scaffold_2714_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(947..2314)
DNA (1368bp) protein (456aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Phosphoglucosamine mutase n=1 Tax=Rhodanobacter denitrificans RepID=I4WXF8_9GAMM
phosphoglucosamine mutase
scnpilot_solids1_trim150_scaffold_2714_3
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2376..3287)
DNA (912bp) protein (304aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
dihydropteroate synthase n=1 Tax=Dyella japonica RepID=UPI000304A180
dihydropteroate synthase
scnpilot_solids1_trim150_scaffold_2714_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3318..3884)
DNA (567bp) protein (189aa)
Oligoribonuclease {ECO:0000256|HAMAP-Rule:MF_00045}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00045};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Oligoribonuclease n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX11_9GAMM
oligoribonuclease (3'->5' exoribonuclease)
scnpilot_solids1_trim150_scaffold_2714_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3957..5420
DNA (1464bp) protein (488aa)
exonuclease I (EC:3.1.11.1)
Exodeoxyribonuclease I {ECO:0000256|PIRNR:PIRNR000977}; EC=3.1.11.1 {ECO:0000256|PIRNR:PIRNR000977};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Exonuclease I n=1 Tax=Rhodanobacter denitrificans RepID=M4NHV4_9GAMM
scnpilot_solids1_trim150_scaffold_2714_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5526..6212
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI03_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99094.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
TIGR02453 family protein
scnpilot_solids1_trim150_scaffold_2714_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6243..7193)
DNA (951bp) protein (317aa)
Elongation factor P--(R)-beta-lysine ligase {ECO:0000256|SAAS:SAAS00088906}; EC=6.3.1.- {ECO:0000256|SAAS:SAAS00088909};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Lysyl-tRNA synthetase-like protein GenX n=1 Tax=Rhodanobacter denitrificans RepID=M4NGN0_9GAMM
lysyl-tRNA synthetase-like protein GenX
scnpilot_solids1_trim150_scaffold_2714_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7190..7477)
DNA (288bp) protein (96aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
DNA ligase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNM5_9GAMM
DNA ligase, NAD-dependent
scnpilot_solids1_trim150_scaffold_2714_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7503..9488)
DNA (1986bp) protein (662aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
DNA ligase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNM5_9GAMM
DNA ligase, NAD-dependent
scnpilot_solids1_trim150_scaffold_2714_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9541..9951)
DNA (411bp) protein (137aa)
GreA/GreB family elongation factor n=1 Tax=Rhodanobacter denitrificans RepID=I4WXE9_9GAMM
transcription elongation factor
Transcription elongation factor {ECO:0000313|EMBL:AGG89259.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_2714_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10071..11573
DNA (1503bp) protein (501aa)
Arabinose efflux permease family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXE6_9GAMM
Arabinose efflux permease family protein {ECO:0000313|EMBL:EIL91887.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
arabinose efflux permease family protein
scnpilot_solids1_trim150_scaffold_2714_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11666..13015
DNA (1350bp) protein (450aa)
Na+/H+ antiporter NhaD n=1 Tax=Rhodanobacter sp. 115 RepID=I4VQX4_9GAMM
Na+/H+ antiporter NhaD {ECO:0000313|EMBL:EIL89615.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
NhaD-like Na+/H+ antiporter rbh
scnpilot_solids1_trim150_scaffold_2714_13
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13131..13694)
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI000372F2B0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL72365.1}; Flags: Precursor;; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
scnpilot_solids1_trim150_scaffold_2714_14
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13931..15277
DNA (1347bp) protein (449aa)
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI000371659F
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
Displaying 14 items

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