ggKbase home page

scnpilot_solids1_trim150_scaffold_143

Search features with annotation key words

Displaying items 1-30 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_143_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..504)
DNA (504bp) protein (168aa)
UvrABC system protein B n=1 Tax=Rhodanobacter denitrificans RepID=M4NID7_9GAMM
Excinuclease ABC subunit B
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_143_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

656..1195
DNA (540bp) protein (180aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NJK0_9GAMM
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGG89863.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_143_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1415..3925
DNA (2511bp) protein (837aa)
Cation transporting P-type ATPase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU17_9GAMM rbh
Cation transporting P-type ATPase {ECO:0000313|EMBL:EIM02959.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
P-type ATPase, translocating rbh
scnpilot_solids1_trim150_scaffold_143_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4136..4744
DNA (609bp) protein (203aa)
TetR family transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WYP7_9GAMM
TetR family transcriptional regulator {ECO:0000313|EMBL:EIL91563.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
transcriptional regulator
scnpilot_solids1_trim150_scaffold_143_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4863..5897
DNA (1035bp) protein (345aa)
Multidrug resistance efflux pump n=1 Tax=Rhodanobacter denitrificans RepID=M4NG44_9GAMM
multidrug resistance efflux pump
Multidrug resistance efflux pump {ECO:0000313|EMBL:AGG89869.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_143_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5900..7672
DNA (1773bp) protein (591aa)
Monosaccharide-transporting ATPase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU13_9GAMM
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:EIM02955.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ABC-type multidrug transport system, ATPase component
scnpilot_solids1_trim150_scaffold_143_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7669..8838
DNA (1170bp) protein (390aa)
Putative ABC transporter permease n=1 Tax=Rhodanobacter denitrificans RepID=I4WYP3_9GAMM
ABC-type multidrug transport system, permease component
ABC-type multidrug transport system, permease component {ECO:0000313|EMBL:AGG89871.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_143_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8854..9957
DNA (1104bp) protein (368aa)
ABC transporter n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU11_9GAMM
ABC transporter {ECO:0000313|EMBL:EIM02953.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ABC-type multidrug transport system, permease component
scnpilot_solids1_trim150_scaffold_143_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10120..11499)
DNA (1380bp) protein (460aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Signal transduction histidine kinase n=1 Tax=Rhodanobacter denitrificans RepID=M4NG55_9GAMM
signal transduction histidine kinase
scnpilot_solids1_trim150_scaffold_143_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11496..12170)
DNA (675bp) protein (225aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Rhodanobacter denitrificans RepID=M4NG02_9GAMM rbh
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain rbh
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:AGG89880.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_143_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12219..12770)
DNA (552bp) protein (184aa)
Cytochrome B561 n=1 Tax=Rhodanobacter denitrificans RepID=I4WYN3_9GAMM
Cytochrome B561 {ECO:0000313|EMBL:EIL93046.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cytochrome b
scnpilot_solids1_trim150_scaffold_143_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12797..13069)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0Q4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93045.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_143_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13313..14704
DNA (1392bp) protein (464aa)
Putative exonuclease of the beta-lactamase fold involved in RNA processing n=1 Tax=Rhodanobacter denitrificans RepID=M4NIM4_9GAMM
putative exonuclease of the beta-lactamase fold involved in RNA processing
Putative exonuclease of the beta-lactamase fold involved in RNA processing {ECO:0000313|EMBL:AGG89947.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_143_14

Not on your lists

comp(14754..15350)
DNA (597bp) protein (199aa)
Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=mine drainage metagenome RepID=T1BTL7_9ZZZZ
Response regulator receiver modulated metal dependent phosphohydrolase {ECO:0000313|EMBL:EQD57295.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
metal dependent phosphohydrolase
scnpilot_solids1_trim150_scaffold_143_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15679..15945
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NGC6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89949.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_143_16
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15942..16931
DNA (990bp) protein (330aa)
Cytochrome c2 n=1 Tax=Rhodanobacter denitrificans RepID=M4NG81_9GAMM
cytochrome c2
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_143_17
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16931..18631
DNA (1701bp) protein (567aa)
Nitric-oxide reductase subunit B n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VWJ1_9GAMM
Nitric-oxide reductase subunit B {ECO:0000313|EMBL:EIL91582.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
nitric oxide reductase large subunit
scnpilot_solids1_trim150_scaffold_143_18
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18740..19210)
DNA (471bp) protein (157aa)
OsmC family protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VT25_9GAMM
OsmC family protein {ECO:0000313|EMBL:EIL90366.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
OsmC family protein
scnpilot_solids1_trim150_scaffold_143_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19227..22514)
DNA (3288bp) protein (1096aa)
Acriflavin resistance protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEU5_9GAMM
Acriflavin resistance protein {ECO:0000313|EMBL:EIL97986.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
cation/multidrug efflux pump
scnpilot_solids1_trim150_scaffold_143_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22507..23598)
DNA (1092bp) protein (364aa)
RND family efflux transporter MFP subunit n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEU4_9GAMM
RND family efflux transporter MFP subunit {ECO:0000313|EMBL:EIL97985.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
RND family efflux transporter, MFP subunit
scnpilot_solids1_trim150_scaffold_143_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23595..23978)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEU3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97984.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_143_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24009..24215)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUX9_9GAMM
Protein of unknown function (DUF2892)
Uncharacterized protein {ECO:0000313|EMBL:AGG87338.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_143_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24259..25545)
DNA (1287bp) protein (429aa)
NADH dehydrogenase, FAD-containing subunit (EC:1.8.5.-)
NADH dehydrogenase, FAD-containing subunit {ECO:0000313|EMBL:AGG87339.1}; EC=1.8.5.- {ECO:0000313|EMBL:AGG87339.1};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
NADH dehydrogenase, FAD-containing subunit n=1 Tax=Rhodanobacter denitrificans RepID=I4WUY0_9GAMM
scnpilot_solids1_trim150_scaffold_143_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25750..26100
DNA (351bp) protein (117aa)
ArsR family transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WUY1_9GAMM
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AGG87340.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_143_25
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26151..27017
DNA (867bp) protein (289aa)
Metallo-beta-lactamase family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VY60_9GAMM
Metallo-beta-lactamase family protein {ECO:0000313|EMBL:EIL92151.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Zn-dependent hydrolase, glyoxylase
scnpilot_solids1_trim150_scaffold_143_26
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27051..27827
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VY62_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92153.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein; K07090
scnpilot_solids1_trim150_scaffold_143_27
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28059..28889)
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036B80AB
Uncharacterized protein {ECO:0000313|EMBL:EQB10842.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_143_28
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28988..31669)
DNA (2682bp) protein (894aa)
Acetyltransferase n=1 Tax=Oceanibaculum indicum P24 RepID=K2K3X6_9PROT
Acetyltransferase {ECO:0000313|EMBL:EKE72130.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
acetyltransferase; K09181 hypothetical protein
scnpilot_solids1_trim150_scaffold_143_29
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31889..32551
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003694ADC
Transcriptional regulator {ECO:0000313|EMBL:KGI76681.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
winged helix family two component transcriptional regulator
scnpilot_solids1_trim150_scaffold_143_30
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32538..33932
DNA (1395bp) protein (465aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B2F87
Uncharacterized protein {ECO:0000313|EMBL:KGI76680.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
histidine kinase
Displaying items 1-30 of 76 in total

View Taxonomy