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scnpilot_solids1_trim150_scaffold_613

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_613_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..558
DNA (558bp) protein (186aa)
Transcriptional regulator n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VR65_9GAMM
Transcriptional regulator {ECO:0000313|EMBL:EIL89706.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
AraC family transcriptional regulator
scnpilot_solids1_trim150_scaffold_613_2
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

610..1650
DNA (1041bp) protein (347aa)
Transcriptional regulator, AraC family n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RGC1_PHEZH
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACG77245.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
scnpilot_solids1_trim150_scaffold_613_3
unknown

Not on your lists

1701..2297
DNA (597bp) protein (199aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_613_4
Shewanella baltica, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2394..3002
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00036D7A9E
peptidase M23
Peptidase M23B {ECO:0000313|EMBL:ABX48915.1}; Flags: Precursor;; TaxID=399599 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella baltica (strain OS195).;"
scnpilot_solids1_trim150_scaffold_613_5
unknown

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3443..3703
DNA (261bp) protein (87aa)
hypothetical protein SCB01_14669 id=3785452 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
scnpilot_solids1_trim150_scaffold_613_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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3691..4116
DNA (426bp) protein (142aa)
PilT protein-like id=3785451 bin=GWC2_Methylomirabilis_70_24 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
PilT protein domain-containing protein
Tax=GWA2_Rokubacteria_70_23_curated
scnpilot_solids1_trim150_scaffold_613_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4197..4862)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WTE7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88280.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_613_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4865..5386)
DNA (522bp) protein (174aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Rhodanobacter denitrificans RepID=M4NCB7_9GAMM
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGG88279.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_613_9
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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5900..6667
DNA (768bp) protein (256aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47G22_DECAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ46209.1}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
scnpilot_solids1_trim150_scaffold_613_10
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6924..7643
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Plesiomonas shigelloides 302-73 RepID=R8APT7_PLESH
Uncharacterized protein {ECO:0000313|EMBL:KGI78923.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein; K09797 hypothetical protein
scnpilot_solids1_trim150_scaffold_613_11
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7799..8740
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003493AEF
Uncharacterized protein {ECO:0000313|EMBL:KFN41200.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
esterase/lipase-like protein
scnpilot_solids1_trim150_scaffold_613_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8872..11121)
DNA (2250bp) protein (750aa)
TonB-dependent receptor n=1 Tax=Rhodanobacter sp. 115 RepID=I4VI15_9GAMM
TonB-dependent receptor {ECO:0000313|EMBL:EIL86856.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
scnpilot_solids1_trim150_scaffold_613_13
unknown

Not on your lists

comp(11126..11296)
DNA (171bp) protein (57aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_613_14
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11325..11759)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VI16_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL86857.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
scnpilot_solids1_trim150_scaffold_613_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12014..12646
DNA (633bp) protein (211aa)
thymidine kinase (EC:2.7.1.21)
Thymidine kinase {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544}; EC=2.7.1.21 {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Thymidine kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WJM2_9GAMM
scnpilot_solids1_trim150_scaffold_613_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12663..13436
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VR03_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89644.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_613_17
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13487..14314)
DNA (828bp) protein (276aa)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020852}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule:MF_00103};; DNA-(apurinic or apyrimidinic site) lyase MutM {ECO:0000256|HAMAP-Rule:MF_00103}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
formamidopyrimidine-DNA glycosylase Fpg (EC:4.2.99.18)
Formamidopyrimidine-DNA glycosylase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRD3_9GAMM
scnpilot_solids1_trim150_scaffold_613_18
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14456..14950)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRD2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89773.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_613_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14954..16306)
DNA (1353bp) protein (451aa)
ABC transporter n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCN1_9GAMM
ABC transporter {ECO:0000313|EMBL:EIL97222.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ABC-type uncharacterized transporter
scnpilot_solids1_trim150_scaffold_613_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16306..17091)
DNA (786bp) protein (262aa)
ABC transporter permease n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8S1_9GAMM rbh
ABC transporter permease {ECO:0000313|EMBL:EIL95862.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_613_21
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17088..17852)
DNA (765bp) protein (255aa)
Multidrug ABC transporter ATPase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRC9_9GAMM
Multidrug ABC transporter ATPase {ECO:0000313|EMBL:EIL89770.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ABC-type multidrug transport system, ATPase component
scnpilot_solids1_trim150_scaffold_613_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18045..19250
DNA (1206bp) protein (402aa)
Fatty-acid desaturase n=1 Tax=Rhodanobacter denitrificans RepID=M4NLS5_9GAMM
fatty-acid desaturase
Fatty-acid desaturase {ECO:0000313|EMBL:AGG90613.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_613_23
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(19562..22639)
DNA (3078bp) protein (1026aa)
Glycosyl hydrolase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SFE9_9BACT
Glycosyl hydrolase {ECO:0000313|EMBL:BAL54885.1}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
BNR repeat-containing glycosyl hydrolase
scnpilot_solids1_trim150_scaffold_613_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23036..26179)
DNA (3144bp) protein (1048aa)
Acriflavin resistance protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2P2_9GAMM
Acriflavin resistance protein {ECO:0000313|EMBL:EIL93733.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cation/multidrug efflux pump
scnpilot_solids1_trim150_scaffold_613_25
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26176..26463)
DNA (288bp) protein (96aa)
Acriflavin resistance protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLB0_9GAMM
Acriflavin resistance protein {ECO:0000313|EMBL:EIL88001.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
cation/multidrug efflux pump
Displaying 25 items

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