ggKbase home page

scnpilot_solids1_trim150_scaffold_731

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_731_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53..670
DNA (618bp) protein (206aa)
Putative outer membrane protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WMQ3_9GAMM
Putative outer membrane protein {ECO:0000313|EMBL:EIM00745.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative outer membrane protein
scnpilot_solids1_trim150_scaffold_731_2
unknown

Not on your lists

comp(975..1232)
DNA (258bp) protein (86aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_731_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1349..4429)
DNA (3081bp) protein (1027aa)
Acriflavin resistance protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WX03_9GAMM
Cation/multidrug efflux pump {ECO:0000313|EMBL:AGG87363.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
cation/multidrug efflux pump
scnpilot_solids1_trim150_scaffold_731_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4426..5568)
DNA (1143bp) protein (381aa)
RND family efflux transporter, MFP subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NC65_9GAMM
RND family efflux transporter, MFP subunit
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:AGG87362.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_731_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5565..6998)
DNA (1434bp) protein (478aa)
Outer membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NHQ9_9GAMM
outer membrane protein
Outer membrane protein {ECO:0000313|EMBL:AGG87361.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_731_6
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7104..7769
DNA (666bp) protein (222aa)
Winged helix family two component transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WXV7_9GAMM rbh
Transcriptional regulator {ECO:0000313|EMBL:GAN45595.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
winged helix family two component transcriptional regulator
scnpilot_solids1_trim150_scaffold_731_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7771..9219
DNA (1449bp) protein (483aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Signal transduction histidine kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WXV8_9GAMM
histidine kinase
scnpilot_solids1_trim150_scaffold_731_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9261..10052)
DNA (792bp) protein (264aa)
SapC protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W7L5_9GAMM
SapC protein {ECO:0000313|EMBL:EIL95456.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SapC
scnpilot_solids1_trim150_scaffold_731_9
Brevibacterium casei, Brevibacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10242..11069
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Brevibacterium linens RepID=UPI000050F8D7
Uncharacterized protein {ECO:0000313|EMBL:EKU46668.1}; TaxID=1229781 species="Bacteria; Actinobacteria; Micrococcales; Brevibacteriaceae; Brevibacterium.;" source="Brevibacterium casei S18.;"
thioesterase-like superfamily protein
scnpilot_solids1_trim150_scaffold_731_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11224..11829
DNA (606bp) protein (202aa)
Restriction endonuclease n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSN1_9GAMM
Restriction endonuclease {ECO:0000313|EMBL:EIM02473.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
restriction endonuclease
scnpilot_solids1_trim150_scaffold_731_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11902..13794
DNA (1893bp) protein (631aa)
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WKK9_9GAMM
scnpilot_solids1_trim150_scaffold_731_12
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13870..14700)
DNA (831bp) protein (277aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; K02493 release factor glutamine methyltransferase [EC:2.1.1.-]
Release factor glutamine methyltransferase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7USK8_PSEUP
scnpilot_solids1_trim150_scaffold_731_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14900..15805
DNA (906bp) protein (302aa)
LysR family transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJC6_9GAMM
LysR family transcriptional regulator {ECO:0000313|EMBL:EIL99567.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
transcriptional regulator
scnpilot_solids1_trim150_scaffold_731_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15873..16475
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYP4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92335.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_731_15
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16575..16856)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7Q4_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_731_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16997..18016
DNA (1020bp) protein (340aa)
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Glutamine--tRNA ligase n=1 Tax=Rhodanobacter denitrificans RepID=M4NJC5_9GAMM
scnpilot_solids1_trim150_scaffold_731_17
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18013..18729
DNA (717bp) protein (239aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXZ4_9GAMM
scnpilot_solids1_trim150_scaffold_731_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18731..19288
DNA (558bp) protein (186aa)
Zinc-binding CMP/dCMP deaminase protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZF5_9GAMM
cytosine/adenosine deaminase
Cytosine/adenosine deaminase {ECO:0000313|EMBL:AGG87900.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_731_19
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19285..20016
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXZ6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92087.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_731_20
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(20035..22221)
DNA (2187bp) protein (729aa)
hypothetical protein id=16783896 bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=Maribacter taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
scnpilot_solids1_trim150_scaffold_731_trna_1
unknown

Not on your lists

comp(22462..22534)
DNA (73bp)
transferRNA Lys
scnpilot_solids1_trim150_scaffold_731_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22601..23296)
DNA (696bp) protein (232aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" sourc
7-cyano-7-deazaguanine synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NJB2_9GAMM
queuosine biosynthesis protein QueC
scnpilot_solids1_trim150_scaffold_731_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23397..24068)
DNA (672bp) protein (224aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
7-carboxy-7-deazaguanine synthase n=1 Tax=Dyella ginsengisoli RepID=UPI00034ACDA5
organic radical activating enzyme
scnpilot_solids1_trim150_scaffold_731_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24195..24992)
DNA (798bp) protein (266aa)
Tol-pal system protein YbgF n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYN5_9GAMM
Tol-pal system protein YbgF {ECO:0000313|EMBL:EIL92326.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
tol-pal system protein YbgF
scnpilot_solids1_trim150_scaffold_731_24
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25028..25540)
DNA (513bp) protein (171aa)
Peptidoglycan-associated lipoprotein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VY06_9GAMM
Peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:EIL92097.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
peptidoglycan-associated lipoprotein
scnpilot_solids1_trim150_scaffold_731_25
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25784..27103)
DNA (1320bp) protein (440aa)
Protein TolB n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VY07_9GAMM
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
tol-pal system beta propeller repeat protein TolB
scnpilot_solids1_trim150_scaffold_731_26
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27112..28053)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VY08_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92099.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
F0F1-type ATP synthase, beta subunit
scnpilot_solids1_trim150_scaffold_731_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28040..28489)
DNA (450bp) protein (150aa)
TolR protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGU0_9GAMM
Cell division and transport-associated protein TolR
TolR protein {ECO:0000313|EMBL:EIL98681.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_731_28
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28505..29197)
DNA (693bp) protein (231aa)
TolQ protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VY10_9GAMM
TolQ protein {ECO:0000313|EMBL:EIL92101.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Cell division and transport-associated protein TolQ
scnpilot_solids1_trim150_scaffold_731_29
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29307..29711)
DNA (405bp) protein (135aa)
Tol-pal system-associated acyl-CoA thioesterase n=1 Tax=Rhodanobacter denitrificans RepID=M4NEE1_9GAMM
tol-pal system-associated acyl-CoA thioesterase
Tol-pal system-associated acyl-CoA thioesterase {ECO:0000313|EMBL:EIL92320.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Displaying items 1-30 of 47 in total

View Taxonomy