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scnpilot_solids1_trim150_scaffold_931

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_931_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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235..2295
DNA (2061bp) protein (687aa)
TonB-dependent receptor n=1 Tax=Rhodanobacter sp. 115 RepID=I4WC73_9GAMM rbh
TonB-dependent receptor {ECO:0000313|EMBL:EIL97064.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
scnpilot_solids1_trim150_scaffold_931_2
Burkholderia phytofirmans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2299..3747
DNA (1449bp) protein (483aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034AED77 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACD20476.1}; Flags: Precursor;; TaxID=398527 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phytofirmans (strain DSM 17436 / PsJN).;"
scnpilot_solids1_trim150_scaffold_931_trna_1
unknown

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comp(3884..3967)
DNA (84bp)
transferRNA Leu
scnpilot_solids1_trim150_scaffold_931_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4029..5291)
DNA (1263bp) protein (421aa)
Pheromone shutdown-related protein TraB n=1 Tax=Rhodanobacter denitrificans RepID=M4NDG5_9GAMM
pheromone shutdown-related protein TraB
Pheromone shutdown-related protein TraB {ECO:0000313|EMBL:AGG88769.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_931_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5371..6261)
DNA (891bp) protein (297aa)
Putative amidohydrolase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIL9_9GAMM
Putative amidohydrolase {ECO:0000313|EMBL:EIL99310.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative amidohydrolase
scnpilot_solids1_trim150_scaffold_931_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6357..7406)
DNA (1050bp) protein (350aa)
Peptidylarginine deiminase-like protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIL8_9GAMM
Peptidylarginine deiminase-like protein {ECO:0000313|EMBL:EIL99309.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
peptidylarginine deiminase-like enzyme
scnpilot_solids1_trim150_scaffold_931_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7506..7934)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VSP5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90236.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_931_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8059..9963
DNA (1905bp) protein (635aa)
ABC transporter ATPase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VSP6_9GAMM
ABC transporter ATPase {ECO:0000313|EMBL:EIL90237.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ABC transporter ATPase; K06158 ATP-binding cassette, subfamily F, member 3
scnpilot_solids1_trim150_scaffold_931_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9971..10885
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWN4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91625.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_931_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11012..11386
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIL3_9GAMM
Protein of unknown function (DUF3478)
Uncharacterized protein {ECO:0000313|EMBL:EIL99304.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_931_10
unknown

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11470..11598
DNA (129bp) protein (43aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_931_11
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11674..13395
DNA (1722bp) protein (574aa)
asparagine synthase, glutamine-hydrolyzing (EC:6.3.5.4)
asparagine synthetase B n=1 Tax=Dyella japonica RepID=UPI0002E17167
Asparagine synthetase B {ECO:0000313|EMBL:AIF47955.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
scnpilot_solids1_trim150_scaffold_931_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13506..14588
DNA (1083bp) protein (361aa)
Peptide chain release factor 2 n=1 Tax=Rhodanobacter denitrificans RepID=M4NDJ7_9GAMM
bacterial peptide chain release factor 2 (bRF-2)
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_931_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14617..14943
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIL0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99301.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_931_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15015..16541
DNA (1527bp) protein (509aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Lysine--tRNA ligase n=1 Tax=Rhodanobacter denitrificans RepID=I4WXT1_9GAMM
lysyl-tRNA synthetase (class II)
scnpilot_solids1_trim150_scaffold_931_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16547..17038
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WXT0_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88802.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_931_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17095..17397
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WXS9_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88803.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_931_17
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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17394..17666
DNA (273bp) protein (91aa)
Stress-induced morphogen n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIK7_9GAMM
stress-induced morphogen; K05527 BolA protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_931_18
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17791..18804
DNA (1014bp) protein (338aa)
Chromosome partition protein Smc n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VSQ6_9GAMM
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
chromosome segregation protein SMC
Displaying 19 items

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