ggKbase home page

scnpilot_solids1_trim150_scaffold_1053

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1053_trna_2
unknown

Not on your lists

comp(14..97)
DNA (84bp)
transferRNA Leu
scnpilot_solids1_trim150_scaffold_1053_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

228..2804
DNA (2577bp) protein (859aa)
RNAse R (EC:3.1.-.-)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Ribonuclease R n=1 Tax=Rhodanobacter denitrificans RepID=M4NGE8_9GAMM
scnpilot_solids1_trim150_scaffold_1053_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2801..3544
DNA (744bp) protein (248aa)
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB {ECO:0000256|HAMAP-Rule:MF_01887}; EC=2.1.1.185 {ECO:0000256|HAMAP-Rule:MF_01887};; 23S rRNA (guanosine2251 2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01887}; 23S rRNA Gm2251 2'-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01887}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
23S rRNA Gm-2251 2'-O-methyltransferase (EC:2.1.1.-)
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8J6_9GAMM
scnpilot_solids1_trim150_scaffold_1053_3
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3541..3816
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPE1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89082.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1053_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3832..4497)
DNA (666bp) protein (222aa)
Ribonuclease T {ECO:0000256|HAMAP-Rule:MF_00157, ECO:0000256|SAAS:SAAS00051933}; EC=3.1.13.- {ECO:0000256|HAMAP-Rule:MF_00157, ECO:0000256|SAAS:SAAS00051955};; Exoribonuclease T {ECO:0000256|HAMAP-Rule:MF_00157}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
RNAse T (EC:3.1.13.-)
Ribonuclease T n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWQ7_9GAMM
scnpilot_solids1_trim150_scaffold_1053_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4536..5156)
DNA (621bp) protein (207aa)
High frequency lysogenization protein HflD homolog n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIQ0_9GAMM
High frequency lysogenization protein HflD homolog {ECO:0000256|HAMAP-Rule:MF_00695}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
uncharacterized protein involved in purine metabolism
scnpilot_solids1_trim150_scaffold_1053_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5202..6347)
DNA (1146bp) protein (382aa)
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Rhodanobacter denitrificans RepID=I4WY10_9GAMM
scnpilot_solids1_trim150_scaffold_1053_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6515..6841
DNA (327bp) protein (109aa)
ATP-dependent Clp protease adapter protein ClpS n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWQ2_9GAMM
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1053_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6906..9179
DNA (2274bp) protein (758aa)
ATP-dependent Clp protease ATP-binding subunit ClpA (EC:3.4.21.92)
ATP-dependent Clp protease subunit n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIP6_9GAMM
ATP-dependent Clp protease subunit {ECO:0000313|EMBL:EIL99337.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_1053_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9268..9543)
DNA (276bp) protein (92aa)
Translation initiation factor IF-1 n=2 Tax=Rhodanobacter RepID=I4WY06_9GAMM
translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_1053_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9586..9861)
DNA (276bp) protein (92aa)
Putative polyhydroxyalkanoic acid system protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWP9_9GAMM
Putative polyhydroxyalkanoic acid system protein {ECO:0000313|EMBL:EIL91640.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1053_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10035..10796
DNA (762bp) protein (254aa)
FHA domain-containing protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIP3_9GAMM
FHA domain-containing protein {ECO:0000313|EMBL:EIL99334.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
FHA domain-containing protein
scnpilot_solids1_trim150_scaffold_1053_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10959..12047
DNA (1089bp) protein (363aa)
chorismate mutase, clade 2 (EC:5.4.99.5 4.2.1.51)
Chorismate mutase, clade 2 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNL7_9GAMM
Chorismate mutase, clade 2 {ECO:0000313|EMBL:EIL88808.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_1053_13
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12082..13392
DNA (1311bp) protein (437aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIP0_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1053_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13453..14229
DNA (777bp) protein (259aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWP4_9GAMM
3-deoxy-D-manno-octulosonate cytidylyltransferase
scnpilot_solids1_trim150_scaffold_1053_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14283..16109
DNA (1827bp) protein (609aa)
UvrABC system protein C n=1 Tax=Rhodanobacter denitrificans RepID=M4NLZ1_9GAMM
Excinuclease ABC subunit C
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1053_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16179..16796
DNA (618bp) protein (206aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:AGG88757.1}; EC=2.7.8.5 {ECO:0000313|EMBL:AGG88757.1};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WXZ8_9GAMM
scnpilot_solids1_trim150_scaffold_1053_trna_1
unknown

Not on your lists

16877..16949
DNA (73bp)
transferRNA Gly
Displaying 18 items

View Taxonomy