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scnpilot_solids1_trim150_scaffold_1774

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1774_1
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..460
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI000378A04A
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
scnpilot_solids1_trim150_scaffold_1774_2
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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567..1037
DNA (471bp) protein (157aa)
diamine acetyltransferase n=1 Tax=Empedobacter brevis RepID=UPI00035DB5B7
Putative acetyltransferase {ECO:0000313|EMBL:GAO45481.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
GCN5-related N-acetyltransferase
scnpilot_solids1_trim150_scaffold_1774_3
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1115..1624)
DNA (510bp) protein (170aa)
Bll4334 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89M59_BRADU
hypothetical protein
Bll4334 protein {ECO:0000313|EMBL:BAC49599.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
scnpilot_solids1_trim150_scaffold_1774_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1621..1968)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ17_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87208.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1774_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1965..2567)
DNA (603bp) protein (201aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138};; NAD(P)H:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01017}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
NAD(P)H dehydrogenase (quinone) n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ18_9GAMM
NAD(P)H:quinone oxidoreductase, type IV
scnpilot_solids1_trim150_scaffold_1774_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2851..4131
DNA (1281bp) protein (427aa)
hypothetical protein (EC:3.1.-.-)
UPF0761 membrane protein rbn n=1 Tax=Rhodanobacter denitrificans RepID=I4WG37_9GAMM
UPF0761 membrane protein R2APBS1_0944 {ECO:0000256|HAMAP-Rule:MF_00672}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1774_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4128..4607
DNA (480bp) protein (160aa)
Thiol-disulfide isomerase-like thioredoxin n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKN9_9GAMM
Thiol-disulfide isomerase-like thioredoxin {ECO:0000313|EMBL:EIM00031.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
thiol-disulfide isomerase-like thioredoxin
scnpilot_solids1_trim150_scaffold_1774_8
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4607..4873
DNA (267bp) protein (89aa)
Acylphosphatase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2T3_9GAMM
Acylphosphatase {ECO:0000313|EMBL:KGI77190.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
acylphosphatase
scnpilot_solids1_trim150_scaffold_1774_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4890..5969)
DNA (1080bp) protein (360aa)
Peptide chain release factor 1 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ22_9GAMM
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
bacterial peptide chain release factor 1 (bRF-1)
scnpilot_solids1_trim150_scaffold_1774_10
unknown

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comp(5966..6112)
DNA (147bp) protein (49aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1774_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6149..7414)
DNA (1266bp) protein (422aa)
glutamyl-tRNA reductase (EC:1.2.1.70)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Glutamyl-tRNA reductase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W542_9GAMM
scnpilot_solids1_trim150_scaffold_1774_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7532..9289
DNA (1758bp) protein (586aa)
Flp pilus assembly protein TadD n=1 Tax=Rhodanobacter denitrificans RepID=M4NK11_9GAMM
Flp pilus assembly protein TadD
Flp pilus assembly protein TadD {ECO:0000313|EMBL:AGG88111.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1774_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9286..9888
DNA (603bp) protein (201aa)
Outer membrane lipoprotein LolB n=1 Tax=Rhodanobacter denitrificans RepID=M4NDY7_9GAMM
outer membrane lipoprotein LolB
Outer-membrane lipoprotein LolB {ECO:0000256|SAAS:SAAS00002103}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1774_14
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9986..11143
DNA (1158bp) protein (386aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WG29_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying 14 items

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