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scnpilot_solids1_trim150_scaffold_1068_12

Organism: SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_12

partial RP 35 / 55 MC: 1 BSCG 37 / 51 MC: 2 ASCG 10 / 38
Location: comp(8211..8939)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor FliA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYT2_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 80.2
  • Coverage: 242.0
  • Bit_score: 392
  • Evalue 3.60e-106
RNA polymerase sigma factor FliA {ECO:0000256|HAMAP-Rule:MF_00962}; RNA polymerase sigma factor for flagellar operon {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma F {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma-28 {ECO:0000256|HAMAP-Rule:MF_00962}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.2
  • Coverage: 242.0
  • Bit_score: 392
  • Evalue 5.10e-106
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG similarity KEGG
DB: KEGG
  • Identity: 80.2
  • Coverage: 242.0
  • Bit_score: 386
  • Evalue 6.30e-105

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Taxonomy

Rhodanobacter fulvus → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 729
ATGAGTGTGGCCTCGGAATACCTACAGCACTCGCGGGACAGCGCGGAGGAGCTGGTGCGCCGGCATGCGCCGCTGGTCAGGCGCATCGCCTATCACCTGATGGGCCGCCTGCCGGCAAGCGTGGACGTCAACGACCTGATCCAGGCCGGAATGCTGGGCCTGCTCGAGGCAGCGCGGAATTTCGCCACCGACCGCGGCGCCAGCTTCGAGACTTTTGCCGGCATCCGCGTGCGCGGTGCCATGCTAGACGAATTGCGCCGCGCCGACTGGACCCCGCGCTCAGTGCACCGCAAGTCCCGCGAGGTGGCCGAGGTCATCCGCCAGATCGAGGCGGAAACCGGTGCCGACGCCGAGGACGGCGAGATCATGCGCCGGCTTGGTCTGAGCGCCGACGAATACCACCAGGTGCTGGCCGACGCCGCGTGCGCCCGCCTGCTCAGCCTCACCGCCGCCGATGACGATGGCGAGGGTGCGGTGCTCGAGGTGGCCGACCAGTCGTCGCCGGAGCCGCTCGAGGACATCGAGCGTACGCACCTCAAGGGAGCCCTCGCGACTGCCATTGCCGGCCTGCCGGAGCGTGAGCAGATGGTCATGTCCCTGTACTACGAACAGGAGCTCAACCTGCGGGAGATTGGGGCCGTGCTTGGCGTGACCGAGTCGCGGGTTTGCCAGATCCATGGCCAGGCGGTCGTGCGTCTGCGGGCGCGCCTGACCGATTGGCGCGACTGA
PROTEIN sequence
Length: 243
MSVASEYLQHSRDSAEELVRRHAPLVRRIAYHLMGRLPASVDVNDLIQAGMLGLLEAARNFATDRGASFETFAGIRVRGAMLDELRRADWTPRSVHRKSREVAEVIRQIEAETGADAEDGEIMRRLGLSADEYHQVLADAACARLLSLTAADDDGEGAVLEVADQSSPEPLEDIERTHLKGALATAIAGLPEREQMVMSLYYEQELNLREIGAVLGVTESRVCQIHGQAVVRLRARLTDWRD*