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scnpilot_solids1_trim150_scaffold_1068

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1068_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..371
DNA (369bp) protein (123aa)
Nitroreductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUZ2_9GAMM
Nitroreductase {ECO:0000313|EMBL:EIL91033.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
nitroreductase
scnpilot_solids1_trim150_scaffold_1068_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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359..1273
DNA (915bp) protein (305aa)
5'-3' exonuclease n=1 Tax=Rhodanobacter denitrificans RepID=I4WH67_9GAMM
5'-3' exonuclease (including N-terminal domain of PolI)
5'-3' exonuclease (Including N-terminal domain of PolI) {ECO:0000313|EMBL:AGG88086.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1068_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1326..1922
DNA (597bp) protein (199aa)
NTP pyrophosphohydrolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0C6_9GAMM
NTP pyrophosphohydrolase {ECO:0000313|EMBL:EIL92917.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
NTP pyrophosphohydrolase
scnpilot_solids1_trim150_scaffold_1068_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2114..3274
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYS3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92364.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Flagellar hook-length control protein FliK
scnpilot_solids1_trim150_scaffold_1068_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3271..3528
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYS4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92365.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1068_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3542..3898)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBK5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96846.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Protein of unknown function (DUF2802)
scnpilot_solids1_trim150_scaffold_1068_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3965..4999)
DNA (1035bp) protein (345aa)
Flagellar motor protein MotD n=1 Tax=Rhodanobacter denitrificans RepID=I4WYY0_9GAMM
flagellar motor protein
Flagellar motor protein {ECO:0000313|EMBL:AGG90050.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1068_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4996..5736)
DNA (741bp) protein (247aa)
Flagellar motor component n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYS8_9GAMM
Flagellar motor component {ECO:0000313|EMBL:EIL92369.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
flagellar motor component
scnpilot_solids1_trim150_scaffold_1068_9
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5740..7101)
DNA (1362bp) protein (454aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
chemotaxis protein histidine kinase-like protein; K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI000365B7DD
scnpilot_solids1_trim150_scaffold_1068_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7111..7752)
DNA (642bp) protein (214aa)
Protein phosphatase CheZ {ECO:0000256|PIRNR:PIRNR002884}; EC=3.1.3.- {ECO:0000256|PIRNR:PIRNR002884};; Chemotaxis protein CheZ {ECO:0000256|PIRNR:PIRNR002884}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Chemotaxis protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYY3_9GAMM
chemotaxis protein
scnpilot_solids1_trim150_scaffold_1068_11
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7749..8177)
DNA (429bp) protein (143aa)
chemotaxis protein CheY n=1 Tax=Dyella japonica RepID=UPI000318A67E
Response regulator receiver protein {ECO:0000313|EMBL:EIL92372.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
scnpilot_solids1_trim150_scaffold_1068_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8211..8939)
DNA (729bp) protein (243aa)
RNA polymerase sigma factor FliA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYT2_9GAMM
RNA polymerase sigma factor FliA {ECO:0000256|HAMAP-Rule:MF_00962}; RNA polymerase sigma factor for flagellar operon {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma F {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma-28 {ECO:0000256|HAMAP-Rule:MF_00962}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG
scnpilot_solids1_trim150_scaffold_1068_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8936..9871)
DNA (936bp) protein (312aa)
Site-determining protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYT3_9GAMM
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ATPase involved in chromosome partitioning
scnpilot_solids1_trim150_scaffold_1068_14
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9886..11265)
DNA (1380bp) protein (460aa)
Flagellar biosynthetic protein FlhF n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBC6_9GAMM
flagellar biosynthetic protein FlhF
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1068_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11436..13529)
DNA (2094bp) protein (698aa)
Flagellar biosynthesis protein FlhA n=1 Tax=Rhodanobacter denitrificans RepID=I4WYY8_9GAMM
flagellar biosynthesis protein FlhA
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:AGG90058.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1068_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13542..14681)
DNA (1140bp) protein (380aa)
Flagellar biosynthetic protein FlhB n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBC8_9GAMM
Flagellar biosynthetic protein FlhB {ECO:0000313|EMBL:EIL96769.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
flagellar biosynthetic protein FlhB
scnpilot_solids1_trim150_scaffold_1068_17
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14685..15455)
DNA (771bp) protein (257aa)
Flagellar biosynthetic protein FliR n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBC9_9GAMM
flagellar biosynthetic protein FliR
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1068_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15452..15721)
DNA (270bp) protein (90aa)
Flagellar biosynthetic protein FliQ n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYT8_9GAMM
flagellar biosynthetic protein FliQ
Flagellar biosynthetic protein FliQ {ECO:0000313|EMBL:AGG90061.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1068_19
unknown

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comp(15718..16548)
DNA (831bp) protein (277aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1068_20
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16545..16739)
DNA (195bp) protein (65aa)
Flagellar biosynthesis protein FliP n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYC0_9GAMM
Flagellar biosynthesis protein FliP {ECO:0000313|EMBL:EIL92211.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
flagellar biosynthetic protein FliP
Displaying 20 items

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