ggKbase | organisms

Consensus taxonomy: Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Curated version: solids_Micrococcales_1

Properties

Avg. coverage: 4.78 Longest contig: 8.51 Kbp Bin length: 1.90 Mbp GC content: 69.60 %

Contigs count: 1001 Features count: 2568 rRNAs count: 0 tRNAs count: 15

Genome completeness

partial RP 26 / 55 MC: 1 BSCG 26 / 51 MC: 2 ASCG 9 / 38

Displaying items 501-550 of 1001 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_24111 Species: Arthrobacter phenanthrenivorans (100%)	2	1541 bp	67.68	4.09	95.20
scnpilot_solids1_trim150_scaffold_27952 Species: Arthrobacter phenanthrenivorans (100%)	2	1386 bp	67.82	4.11	84.42
scnpilot_solids1_trim150_scaffold_22008 Species: Microbacterium sp. TS-1 (50%)	2	1646 bp	68.35	5.65	99.15
scnpilot_solids1_trim150_scaffold_20178 Species: Microbacterium ginsengisoli (50%)	2	1752 bp	70.21	5.57	93.49
scnpilot_solids1_trim150_scaffold_36042 Species: Microbacterium ginsengisoli (50%)	2	1153 bp	69.99	4.03	98.87
scnpilot_solids1_trim150_scaffold_40628 Species: Microbacterium ginsengisoli (50%)	2	1055 bp	71.66	5.55	72.23
scnpilot_solids1_trim150_scaffold_23540 Species: Microbacterium azadirachtae (50%)	2	1571 bp	66.84	4.01	92.43
scnpilot_solids1_trim150_scaffold_22012 Species: Microbacterium azadirachtae (50%)	2	1646 bp	71.57	4.28	86.76
scnpilot_solids1_trim150_scaffold_30412 Species: Arthrobacter phenanthrenivorans (100%)	2	1305 bp	67.28	4.14	94.71
scnpilot_solids1_trim150_scaffold_20437 Species: Knoellia sinensis (50%)	2	1735 bp	69.63	4.76	97.35
scnpilot_solids1_trim150_scaffold_16093 Species: Microbacterium azadirachtae (50%)	2	2052 bp	72.22	3.95	88.60
scnpilot_solids1_trim150_scaffold_39453 Species: Microbacterium azadirachtae (50%)	2	1078 bp	69.94	4.17	84.04
scnpilot_solids1_trim150_scaffold_43718 Species: Arthrobacter phenanthrenivorans (100%)	2	1000 bp	67.90	2.70	75.30
scnpilot_solids1_trim150_scaffold_29382 Species: Microbacterium mangrovi (50%)	2	1337 bp	72.85	4.49	99.18
scnpilot_solids1_trim150_scaffold_19567 Species: Microbacterium oleivorans (50%)	2	1788 bp	70.58	4.45	77.68
scnpilot_solids1_trim150_scaffold_18487 Species: Agreia bicolorata (100%)	2	1858 bp	68.41	3.88	96.72
scnpilot_solids1_trim150_scaffold_35168 Species: Microbacterium azadirachtae (50%)	2	1174 bp	71.47	5.24	93.78
scnpilot_solids1_trim150_scaffold_40378 Species: Microbacterium ginsengisoli (50%)	2	1060 bp	72.55	5.66	84.62
scnpilot_solids1_trim150_scaffold_38738 Species: Intrasporangium chromatireducens (100%)	2	1093 bp	72.10	5.22	99.91
scnpilot_solids1_trim150_scaffold_25578 Species: Microbacterium mangrovi (100%)	2	1479 bp	72.14	4.77	100.20
scnpilot_solids1_trim150_scaffold_26795 Species: Microbacterium sp. C448 (50%)	2	1429 bp	72.36	5.14	95.94
scnpilot_solids1_trim150_scaffold_17795 Species: Arthrobacter phenanthrenivorans (50%)	2	1910 bp	67.02	4.71	98.01
scnpilot_solids1_trim150_scaffold_32245 Species: Microbacterium ginsengisoli (50%)	2	1250 bp	67.84	5.52	91.92
scnpilot_solids1_trim150_scaffold_39205 Species: Microbacterium oxydans (50%)	2	1084 bp	68.45	5.67	92.71
scnpilot_solids1_trim150_scaffold_21885 Species: Arthrobacter phenanthrenivorans (100%)	2	1653 bp	70.66	3.54	93.28
scnpilot_solids1_trim150_scaffold_19830 Species: Microbacterium sp. SUBG005 (50%)	2	1771 bp	68.94	4.66	90.12
scnpilot_solids1_trim150_scaffold_15190 Species: Arthrobacter siccitolerans (100%)	2	2140 bp	67.52	4.42	99.95
scnpilot_solids1_trim150_scaffold_34479 Species: Arthrobacter crystallopoietes (50%)	2	1191 bp	72.80	3.53	100.25
scnpilot_solids1_trim150_scaffold_31343 Species: Microbacterium mangrovi (50%)	2	1276 bp	71.55	4.58	97.81
scnpilot_solids1_trim150_scaffold_26288 Species: Terrabacter carboxydivorans (50%)	2	1450 bp	72.21	3.72	88.34
scnpilot_solids1_trim150_scaffold_10176 Species: Microbacterium mangrovi (50%)	2	2852 bp	69.35	5.26	84.36
scnpilot_solids1_trim150_scaffold_32248 Species: Arthrobacter phenanthrenivorans (100%)	2	1249 bp	67.49	4.20	96.80
scnpilot_solids1_trim150_scaffold_90880 Species: Microbacterium sp. SA39 (50%)	2	1132 bp	70.23	5.57	88.25
scnpilot_solids1_trim150_scaffold_20193 Species: Intrasporangium chromatireducens (100%)	2	1751 bp	68.30	5.65	78.13
scnpilot_solids1_trim150_scaffold_33817 Species: Frigoribacterium sp. MEB024 (50%)	2	1207 bp	67.85	3.23	111.60
scnpilot_solids1_trim150_scaffold_15961 Species: Intrasporangium chromatireducens (100%)	2	2064 bp	71.12	5.09	98.84
scnpilot_solids1_trim150_scaffold_35948 Species: Kocuria rhizophila (50%)	2	1155 bp	69.78	4.94	100.26
scnpilot_solids1_trim150_scaffold_17804 Species: Microbacterium testaceum (50%)	2	1909 bp	67.26	3.69	71.19
scnpilot_solids1_trim150_scaffold_31349 Species: Microbacterium mangrovi (100%)	2	1276 bp	70.77	4.11	99.69
scnpilot_solids1_trim150_scaffold_15453 Species: Arthrobacter sp. PAMC25486 (50%)	2	2114 bp	67.12	5.68	100.05
scnpilot_solids1_trim150_scaffold_29654 Species: Microbacterium azadirachtae (50%)	2	1328 bp	70.03	4.52	99.62
scnpilot_solids1_trim150_scaffold_39471 Species: Microbacterium sp. SA39 (100%)	2	1078 bp	70.04	5.57	97.68
scnpilot_solids1_trim150_scaffold_5087 Species: Arthrobacter sp. PAMC25486 (50%)	2	4760 bp	69.71	6.18	96.05
scnpilot_solids1_trim150_scaffold_19584 Species: Microbacterium mangrovi (100%)	2	1787 bp	72.30	4.78	100.22
scnpilot_solids1_trim150_scaffold_18761 Species: Microbacterium sp. C448 (50%)	2	1840 bp	68.04	3.75	93.26
scnpilot_solids1_trim150_scaffold_41874 Species: Leifsonia aquatica (50%)	2	1031 bp	68.28	3.35	89.91
scnpilot_solids1_trim150_scaffold_29915 Species: Arthrobacter phenanthrenivorans (100%)	2	1320 bp	69.32	4.77	100.23
scnpilot_solids1_trim150_scaffold_33827 Species: Actinotalea fermentans (50%)	2	1207 bp	70.01	3.48	100.17
scnpilot_solids1_trim150_scaffold_31868 Species: Arthrobacter phenanthrenivorans (100%)	2	1261 bp	69.31	3.57	93.02
scnpilot_solids1_trim150_scaffold_29660 Species: Curtobacterium flaccumfaciens (50%)	2	1328 bp	72.82	7.68	94.65

Displaying items 501-550 of 1001 in total

SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

SCNPILOT_SOLID_1_TRIM150_Microbacterium_70_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

SCNPILOT_SOLID_1_TRIM150_Microbacterium_70_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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