ggKbase | organisms

Consensus taxonomy: Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Curated version: solids_Micrococcales_1

Properties

Avg. coverage: 4.78 Longest contig: 8.51 Kbp Bin length: 1.90 Mbp GC content: 69.60 %

Contigs count: 1001 Features count: 2568 rRNAs count: 0 tRNAs count: 15

Genome completeness

partial RP 26 / 55 MC: 1 BSCG 26 / 51 MC: 2 ASCG 9 / 38

Displaying items 551-600 of 1001 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_35189 Species: Microbacterium sp. TS-1 (50%)	2	1174 bp	71.55	4.09	79.98
scnpilot_solids1_trim150_scaffold_27470 Species: Microbacterium ginsengisoli (50%)	2	1403 bp	68.85	5.24	100.29
scnpilot_solids1_trim150_scaffold_27983 Species: Arthrobacter sp. Rue61a (50%)	2	1845 bp	69.76	4.47	100.00
scnpilot_solids1_trim150_scaffold_22295 Species: Arthrobacter phenanthrenivorans (100%)	2	1631 bp	69.22	3.49	96.38
scnpilot_solids1_trim150_scaffold_39992 Species: Arthrobacter phenanthrenivorans (100%)	2	1067 bp	67.76	3.66	96.72
scnpilot_solids1_trim150_scaffold_42681 Species: Microbacterium azadirachtae (50%)	2	1017 bp	69.62	4.42	80.83
scnpilot_solids1_trim150_scaffold_35961 Species: Xylanimonas cellulosilytica (50%)	2	1154 bp	67.68	5.20	93.59
scnpilot_solids1_trim150_scaffold_20721 Species: Microbacterium mangrovi (100%)	2	2314 bp	69.36	4.28	77.92
scnpilot_solids1_trim150_scaffold_23316 Species: Arthrobacter phenanthrenivorans (50%)	2	1581 bp	68.25	3.98	94.69
scnpilot_solids1_trim150_scaffold_43493 Species: Arthrobacter phenanthrenivorans (100%)	2	1004 bp	66.73	4.48	100.70
scnpilot_solids1_trim150_scaffold_24149 Species: Tetrasphaera japonica (100%)	2	1540 bp	66.62	3.41	91.36
scnpilot_solids1_trim150_scaffold_23061 Species: Arthrobacter phenanthrenivorans (100%)	2	1593 bp	68.24	4.14	82.86
scnpilot_solids1_trim150_scaffold_17565 Species: Microbacterium mangrovi (50%)	2	1927 bp	69.28	3.74	98.70
scnpilot_solids1_trim150_scaffold_13806 Species: Microbacterium mangrovi (50%)	2	2293 bp	68.08	4.78	89.10
scnpilot_solids1_trim150_scaffold_19598 Species: Microbacterium mangrovi (50%)	2	1786 bp	67.75	4.79	92.22
scnpilot_solids1_trim150_scaffold_29671 Species: Microbacterium mangrovi (100%)	2	1328 bp	72.29	4.18	99.40
scnpilot_solids1_trim150_scaffold_22816 Species: Microbacterium mangrovi (50%)	2	1605 bp	69.60	4.11	99.25
scnpilot_solids1_trim150_scaffold_40665 Species: Microbacterium sp. C448 (50%)	2	1055 bp	69.86	4.27	100.10
scnpilot_solids1_trim150_scaffold_36849 Species: Microbacterium testaceum (50%)	2	1135 bp	70.40	3.70	90.93
scnpilot_solids1_trim150_scaffold_56297 Species: Microbacterium mangrovi (50%)	2	1256 bp	72.69	4.54	96.97
scnpilot_solids1_trim150_scaffold_40923 Species: Arthrobacter phenanthrenivorans (100%)	2	1050 bp	68.48	2.57	99.71
scnpilot_solids1_trim150_scaffold_34507 Species: Microbacterium sp. C448 (100%)	2	1190 bp	71.76	5.42	100.08
scnpilot_solids1_trim150_scaffold_29164 Species: Microbacterium hominis (50%)	2	1344 bp	70.46	6.58	89.51
scnpilot_solids1_trim150_scaffold_24925 Species: Arthrobacter phenanthrenivorans (100%)	2	1505 bp	70.17	3.89	90.70
scnpilot_solids1_trim150_scaffold_31373 Species: Arthrobacter sp. PAMC25486 (50%)	2	1275 bp	70.67	2.82	100.24
scnpilot_solids1_trim150_scaffold_39750 Species: Arthrobacter chlorophenolicus (100%)	2	1072 bp	68.19	5.04	100.19
scnpilot_solids1_trim150_scaffold_26575 Species: Arthrobacter phenanthrenivorans (100%)	2	1438 bp	67.18	3.96	93.05
scnpilot_solids1_trim150_scaffold_27743 Species: Microbacterium sp. CH12i (50%)	2	1393 bp	66.83	7.86	96.48
scnpilot_solids1_trim150_scaffold_24672 Species: Arthrobacter aurescens (50%)	2	1516 bp	67.02	5.94	97.36
scnpilot_solids1_trim150_scaffold_19609 Species: Microbacterium ginsengisoli (50%)	2	1785 bp	67.23	5.63	98.82
scnpilot_solids1_trim150_scaffold_16906 Species: Leifsonia xyli (50%)	2	1981 bp	67.79	5.38	100.40
scnpilot_solids1_trim150_scaffold_42955 Species: Microbacterium mangrovi (50%)	2	1012 bp	71.74	5.93	100.20
scnpilot_solids1_trim150_scaffold_23587 Species: Microbacterium ginsengisoli (50%)	2	1569 bp	70.11	4.97	100.00
scnpilot_solids1_trim150_scaffold_38011 Species: Microbacterium mangrovi (50%)	2	1108 bp	72.11	4.60	100.18
scnpilot_solids1_trim150_scaffold_22827 Species: Microbacterium sp. TS-1 (50%)	2	1605 bp	69.47	5.23	99.44
scnpilot_solids1_trim150_scaffold_25107 Species: Microbacterium mangrovi (100%)	2	1498 bp	70.76	4.21	99.33
scnpilot_solids1_trim150_scaffold_23588 Species: Arthrobacter sp. FB24 (100%)	2	1569 bp	67.18	6.41	99.43
scnpilot_solids1_trim150_scaffold_33085 Species: Microbacterium mangrovi (50%)	2	1226 bp	71.04	4.16	84.91
scnpilot_solids1_trim150_scaffold_33853 Species: Rothia dentocariosa (50%)	2	1207 bp	68.52	6.46	100.66
scnpilot_solids1_trim150_scaffold_18277 Species: Microbacterium ginsengisoli (100%)	2	1875 bp	68.43	5.20	100.00
scnpilot_solids1_trim150_scaffold_26582 Species: Microbacterium testaceum (50%)	2	1438 bp	71.07	5.01	89.29
scnpilot_solids1_trim150_scaffold_38015 Species: Microbacterium mangrovi (50%)	2	1108 bp	69.77	4.60	96.12
scnpilot_solids1_trim150_scaffold_37753 Species: Microbacterium sp. C448 (50%)	2	1114 bp	72.17	6.06	100.18
scnpilot_solids1_trim150_scaffold_24681 Species: Microbacterium mangrovi (50%)	2	1516 bp	72.69	4.55	65.90
scnpilot_solids1_trim150_scaffold_31898 Species: Microbacterium mangrovi (100%)	2	1260 bp	70.71	4.76	75.95
scnpilot_solids1_trim150_scaffold_38018 Species: Microbacterium oleivorans (50%)	2	1108 bp	70.67	5.55	97.20
scnpilot_solids1_trim150_scaffold_33346 Species: Arthrobacter phenanthrenivorans (50%)	2	1220 bp	67.87	3.69	100.08
scnpilot_solids1_trim150_scaffold_37755 Species: Microbacterium sp. TS-1 (50%)	2	1114 bp	68.49	5.39	87.25
scnpilot_solids1_trim150_scaffold_25371 Species: Microbacterium ginsengisoli (50%)	2	1487 bp	70.41	5.25	91.80
scnpilot_solids1_trim150_scaffold_27756 Species: Xylanimonas cellulosilytica (100%)	2	1392 bp	66.88	5.06	96.12

Displaying items 551-600 of 1001 in total

SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

SCNPILOT_SOLID_1_TRIM150_Microbacterium_70_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

SCNPILOT_SOLID_1_TRIM150_Microbacterium_70_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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