ggKbase | organisms

Consensus taxonomy: Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Curated version: solids_Micrococcales_1

Properties

Avg. coverage: 4.78 Longest contig: 8.51 Kbp Bin length: 1.90 Mbp GC content: 69.60 %

Contigs count: 1001 Features count: 2568 rRNAs count: 0 tRNAs count: 15

Genome completeness

partial RP 26 / 55 MC: 1 BSCG 26 / 51 MC: 2 ASCG 9 / 38

Displaying items 601-650 of 1001 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_31133 Species: Microbacterium mangrovi (50%)	2	1282 bp	71.76	4.91	97.58
scnpilot_solids1_trim150_scaffold_10478 Species: Microbacterium sp. TS-1 (50%)	2	2794 bp	71.40	4.83	91.59
scnpilot_solids1_trim150_scaffold_41911 Species: Microbacterium foliorum (50%)	2	1030 bp	70.68	4.37	68.16
scnpilot_solids1_trim150_scaffold_34016 Species: Microbacterium mangrovi (50%)	2	1202 bp	72.63	4.99	85.11
scnpilot_solids1_trim150_scaffold_39000 Species: Arthrobacter phenanthrenivorans (50%)	2	1088 bp	69.85	4.27	68.93
scnpilot_solids1_trim150_scaffold_38281 Species: Arthrobacter phenanthrenivorans (50%)	2	1102 bp	68.06	3.95	77.59
scnpilot_solids1_trim150_scaffold_21681 Species: Microbacterium azadirachtae (50%)	2	1662 bp	70.76	6.41	83.03
scnpilot_solids1_trim150_scaffold_30729 Species: Microbacterium azadirachtae (50%)	2	1295 bp	66.95	5.10	88.96
scnpilot_solids1_trim150_scaffold_18289 Species: Microbacterium sp. TS-1 (50%)	2	1874 bp	68.84	4.16	85.97
scnpilot_solids1_trim150_scaffold_40434 Species: Tetrasphaera elongata (50%)	2	1059 bp	70.92	3.40	82.15
scnpilot_solids1_trim150_scaffold_33354 Species: Microbacterium testaceum (50%)	2	1220 bp	70.82	3.69	92.70
scnpilot_solids1_trim150_scaffold_39003 Species: Arthrobacter phenanthrenivorans (100%)	2	1088 bp	68.84	4.00	99.54
scnpilot_solids1_trim150_scaffold_22075 Species: Microbacterium oleivorans (50%)	2	1642 bp	71.38	3.93	93.00
scnpilot_solids1_trim150_scaffold_41915 Species: Microbacterium mangrovi (50%)	2	1030 bp	69.32	4.66	84.76
scnpilot_solids1_trim150_scaffold_40438 Species: Intrasporangium chromatireducens (50%)	2	1059 bp	67.23	2.83	93.77
scnpilot_solids1_trim150_scaffold_24439 Species: Microbacterium sp. TS-1 (50%)	2	1526 bp	71.36	5.60	96.33
scnpilot_solids1_trim150_scaffold_39007 Species: Arthrobacter phenanthrenivorans (100%)	2	1088 bp	67.46	3.31	98.71
scnpilot_solids1_trim150_scaffold_9424 Species: Leucobacter sp. UCD-THU (50%)	2	3009 bp	67.93	5.93	95.11
scnpilot_solids1_trim150_scaffold_29704 Species: Microbacterium mangrovi (50%)	2	1327 bp	68.58	4.18	94.50
scnpilot_solids1_trim150_scaffold_40442 Species: Microbacterium oleivorans (50%)	2	1058 bp	70.89	4.54	100.38
scnpilot_solids1_trim150_scaffold_23355 Species: Arthrobacter phenanthrenivorans (50%)	2	1579 bp	67.26	2.85	93.86
scnpilot_solids1_trim150_scaffold_18043 Species: Arthrobacter globiformis (50%)	2	1892 bp	70.88	4.60	100.05
scnpilot_solids1_trim150_scaffold_40444 Species: Sinomonas sp. MUSC 117 (50%)	2	1058 bp	68.43	4.25	96.69
scnpilot_solids1_trim150_scaffold_41412 Species: Microbacterium sp. TS-1 (50%)	2	1680 bp	66.96	4.11	58.21
scnpilot_solids1_trim150_scaffold_19126 Species: Leifsonia aquatica (100%)	2	1817 bp	71.66	4.62	100.06
scnpilot_solids1_trim150_scaffold_37775 Species: Microbacterium mangrovi (50%)	2	1113 bp	69.18	3.91	86.79
scnpilot_solids1_trim150_scaffold_26863 Species: Curtobacterium flaccumfaciens (50%)	2	1427 bp	69.31	5.36	100.70
scnpilot_solids1_trim150_scaffold_23360 Species: Arthrobacter phenanthrenivorans (100%)	2	1579 bp	68.71	4.27	98.04
scnpilot_solids1_trim150_scaffold_37009 Species: Intrasporangium calvum (50%)	2	1131 bp	67.46	2.65	84.35
scnpilot_solids1_trim150_scaffold_16938 Species: Microbacterium sp. TS-1 (50%)	2	1978 bp	68.55	4.17	89.64
scnpilot_solids1_trim150_scaffold_23106 Species: Arthrobacter phenanthrenivorans (100%)	2	1590 bp	66.60	4.81	95.85
scnpilot_solids1_trim150_scaffold_24707 Species: Arthrobacter siccitolerans (50%)	2	1515 bp	69.64	5.15	95.05
scnpilot_solids1_trim150_scaffold_38558 Species: Microbacterium sp. SA39 (50%)	2	1097 bp	71.47	3.83	88.06
scnpilot_solids1_trim150_scaffold_37528 Species: Microbacterium sp. C448 (50%)	2	1119 bp	70.78	3.75	88.20
scnpilot_solids1_trim150_scaffold_37784 Species: Arthrobacter phenanthrenivorans (50%)	2	1113 bp	67.83	2.96	97.30
scnpilot_solids1_trim150_scaffold_28032 Species: Arthrobacter nitrophenolicus (50%)	2	1383 bp	67.90	3.04	77.22
scnpilot_solids1_trim150_scaffold_17361 Species: Microbacterium oleivorans (50%)	2	1944 bp	69.60	4.09	99.85
scnpilot_solids1_trim150_scaffold_20011 Species: Microbacterium mangrovi (100%)	2	1761 bp	71.04	4.94	99.15
scnpilot_solids1_trim150_scaffold_34555 Species: Arthrobacter phenanthrenivorans (100%)	2	1189 bp	69.55	4.42	93.61
scnpilot_solids1_trim150_scaffold_38307 Species: Arthrobacter nicotinovorans (50%)	2	1102 bp	67.33	5.58	79.76
scnpilot_solids1_trim150_scaffold_15523 Species: Microbacterium mangrovi (100%)	2	2107 bp	70.86	8.40	100.10
scnpilot_solids1_trim150_scaffold_38052 Species: Arthrobacter phenanthrenivorans (50%)	2	1107 bp	66.76	5.15	86.45
scnpilot_solids1_trim150_scaffold_34814 Species: Microbacterium mangrovi (50%)	2	1183 bp	68.81	3.04	97.13
scnpilot_solids1_trim150_scaffold_13862 Species: Microbacterium sp. MRS-1 (50%)	2	2286 bp	71.52	5.12	99.61
scnpilot_solids1_trim150_scaffold_33894 Species: Microbacterium mangrovi (50%)	2	1206 bp	70.56	5.47	99.75
scnpilot_solids1_trim150_scaffold_18318 Species: Beutenbergia cavernae (100%)	2	1872 bp	71.37	3.69	100.16
scnpilot_solids1_trim150_scaffold_26623 Species: Leifsonia aquatica (50%)	2	1436 bp	70.19	4.91	97.35
scnpilot_solids1_trim150_scaffold_25663 Species: Arthrobacter phenanthrenivorans (100%)	2	1476 bp	67.01	4.47	90.65
scnpilot_solids1_trim150_scaffold_36135 Species: Microbacterium mangrovi (100%)	2	1727 bp	70.82	6.08	60.28
scnpilot_solids1_trim150_scaffold_32586 Species: Arthrobacter siccitolerans (50%)	2	1240 bp	66.85	2.66	86.85

Displaying items 601-650 of 1001 in total

SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

SCNPILOT_SOLID_1_TRIM150_Microbacterium_70_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

SCNPILOT_SOLID_1_TRIM150_Microbacterium_70_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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