ggKbase | organisms

Consensus taxonomy: Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Curated version: solids_Micrococcales_1

Properties

Avg. coverage: 4.78 Longest contig: 8.51 Kbp Bin length: 1.90 Mbp GC content: 69.60 %

Contigs count: 1001 Features count: 2568 rRNAs count: 0 tRNAs count: 15

Genome completeness

partial RP 26 / 55 MC: 1 BSCG 26 / 51 MC: 2 ASCG 9 / 38

Displaying items 651-700 of 1001 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_12139 Species: Microbacterium sp. C448 (100%)	2	2516 bp	70.07	5.07	100.16
scnpilot_solids1_trim150_scaffold_24723 Species: Arthrobacter phenanthrenivorans (100%)	2	1514 bp	67.04	5.15	92.93
scnpilot_solids1_trim150_scaffold_19147 Species: Arthrobacter siccitolerans (50%)	2	1815 bp	67.33	5.04	96.86
scnpilot_solids1_trim150_scaffold_33899 Species: Arthrobacter phenanthrenivorans (100%)	2	1206 bp	67.33	5.60	89.30
scnpilot_solids1_trim150_scaffold_21204 Species: Microbacterium sp. UCD-TDU (50%)	2	1690 bp	72.90	4.26	94.97
scnpilot_solids1_trim150_scaffold_36396 Species: Arthrobacter phenanthrenivorans (50%)	2	1145 bp	67.25	3.93	92.75
scnpilot_solids1_trim150_scaffold_40981 Species: Microbacterium sp. C448 (50%)	2	1048 bp	69.66	4.44	85.59
scnpilot_solids1_trim150_scaffold_29221 Species: Tetrasphaera australiensis (50%)	2	1342 bp	68.26	4.47	74.22
scnpilot_solids1_trim150_scaffold_20534 Species: Microbacterium sp. TS-1 (50%)	2	1729 bp	70.97	4.25	95.60
scnpilot_solids1_trim150_scaffold_16446 Species: Microbacterium oxydans (50%)	2	2021 bp	71.50	4.30	90.99
scnpilot_solids1_trim150_scaffold_38062 Species: Arthrobacter phenanthrenivorans (100%)	2	1107 bp	68.47	3.25	98.10
scnpilot_solids1_trim150_scaffold_36398 Species: Microbacterium testaceum (50%)	2	1145 bp	70.83	3.67	93.54
scnpilot_solids1_trim150_scaffold_31431 Species: Microbacterium ginsengisoli (50%)	2	1273 bp	71.01	5.18	95.68
scnpilot_solids1_trim150_scaffold_25415 Species: Microbacterium sp. C448 (50%)	2	1486 bp	67.56	4.44	86.00
scnpilot_solids1_trim150_scaffold_42240 Species: Arthrobacter sp. SPG23 (50%)	2	1025 bp	66.63	4.39	92.49
scnpilot_solids1_trim150_scaffold_24728 Species: Microbacterium sp. C448 (50%)	2	1514 bp	72.26	5.75	100.26
scnpilot_solids1_trim150_scaffold_34056 Species: Arthrobacter phenanthrenivorans (50%)	2	1201 bp	67.61	5.50	95.42
scnpilot_solids1_trim150_scaffold_19664 Species: Microbacterium foliorum (50%)	2	1781 bp	73.22	5.14	100.23
scnpilot_solids1_trim150_scaffold_37033 Species: Arthrobacter siccitolerans (50%)	2	1130 bp	67.43	4.51	80.44
scnpilot_solids1_trim150_scaffold_43305 Species: Microbacterium testaceum (50%)	2	1007 bp	67.23	3.28	99.50
scnpilot_solids1_trim150_scaffold_14529 Species: Arthrobacter phenanthrenivorans (50%)	2	2212 bp	68.94	4.27	99.68
scnpilot_solids1_trim150_scaffold_25161 Species: Microbacterium mangrovi (50%)	2	1496 bp	72.93	5.82	93.25
scnpilot_solids1_trim150_scaffold_10522 Species: Microbacterium sp. SA39 (100%)	2	2785 bp	71.71	4.79	98.03
scnpilot_solids1_trim150_scaffold_17378 Species: Microbacterium sp. C448 (50%)	2	1942 bp	72.19	5.25	94.08
scnpilot_solids1_trim150_scaffold_11252 Species: Arthrobacter phenanthrenivorans (50%)	2	2651 bp	69.07	4.24	98.45
scnpilot_solids1_trim150_scaffold_18588 Species: Microbacterium laevaniformans (50%)	2	1850 bp	68.97	4.46	77.35
scnpilot_solids1_trim150_scaffold_40989 Species: Arthrobacter phenanthrenivorans (100%)	2	1048 bp	66.79	3.44	93.61
scnpilot_solids1_trim150_scaffold_37294 Species: Microbacterium sp. CH12i (50%)	2	1125 bp	69.16	5.33	99.20
scnpilot_solids1_trim150_scaffold_20030 Species: Leifsonia xyli (50%)	2	1760 bp	71.08	3.75	93.24
scnpilot_solids1_trim150_scaffold_16454 Species: Microbacterium azadirachtae (50%)	2	2020 bp	70.25	4.46	100.10
scnpilot_solids1_trim150_scaffold_38838 Species: Arthrobacter nitrophenolicus (50%)	2	1091 bp	67.37	3.71	93.77
scnpilot_solids1_trim150_scaffold_17894 Species: Microbacterium testaceum (50%)	2	1902 bp	70.82	5.28	97.00
scnpilot_solids1_trim150_scaffold_37551 Species: Microbacterium sp. TS-1 (50%)	2	1119 bp	66.67	3.89	95.17
scnpilot_solids1_trim150_scaffold_29999 Species: Microbacterium maritypicum (50%)	2	1317 bp	70.08	4.78	94.31
scnpilot_solids1_trim150_scaffold_33399 Species: Microbacterium sp. TS-1 (50%)	2	1218 bp	67.08	3.57	96.31
scnpilot_solids1_trim150_scaffold_11256 Species: Microbacterium mangrovi (100%)	2	2649 bp	71.80	5.10	100.11
scnpilot_solids1_trim150_scaffold_28057 Species: Arthrobacter phenanthrenivorans (100%)	2	1382 bp	67.80	3.69	97.03
scnpilot_solids1_trim150_scaffold_18594 Species: Microbacterium sp. SA39 (50%)	2	1850 bp	68.81	5.27	93.24
scnpilot_solids1_trim150_scaffold_40996 Species: Microbacterium sp. C448 (100%)	2	1048 bp	71.56	3.44	98.19
scnpilot_solids1_trim150_scaffold_32348 Species: Arthrobacter phenanthrenivorans (100%)	2	1247 bp	68.64	3.37	95.03
scnpilot_solids1_trim150_scaffold_23396 Species: Microbacterium oleivorans (50%)	2	1577 bp	71.15	3.80	91.12
scnpilot_solids1_trim150_scaffold_35021 Species: Cellulomonas cellasea (50%)	2	1178 bp	68.93	3.44	85.06
scnpilot_solids1_trim150_scaffold_28061 Species: Cellulomonas fimi (50%)	2	1382 bp	73.30	5.21	93.78
scnpilot_solids1_trim150_scaffold_40743 Species: Arthrobacter phenanthrenivorans (100%)	2	1053 bp	68.28	3.99	87.18
scnpilot_solids1_trim150_scaffold_31703 Species: Arthrobacter phenanthrenivorans (100%)	2	1265 bp	68.85	3.32	97.47
scnpilot_solids1_trim150_scaffold_35792 Species: Microbacterium sp. UCD-TDU (50%)	2	1158 bp	68.31	6.22	90.93
scnpilot_solids1_trim150_scaffold_47451 Species: Arthrobacter siccitolerans (100%)	2	1770 bp	70.06	6.10	90.00
scnpilot_solids1_trim150_scaffold_15296 Species: Microbacterium azadirachtae (100%)	2	2129 bp	72.24	4.86	95.26
scnpilot_solids1_trim150_scaffold_21994 Species: Microbacterium mangrovi (50%)	2	1647 bp	68.73	6.47	77.96
scnpilot_solids1_trim150_scaffold_30787 Species: Cellulomonas flavigena (50%)	2	1294 bp	72.41	7.53	93.20

Displaying items 651-700 of 1001 in total

SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

SCNPILOT_SOLID_1_TRIM150_Microbacterium_70_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

SCNPILOT_SOLID_1_TRIM150_Microbacterium_70_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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