ggKbase | organisms

Consensus taxonomy: Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Curated version: solids_Micrococcales_1

Properties

Avg. coverage: 4.78 Longest contig: 8.51 Kbp Bin length: 1.90 Mbp GC content: 69.60 %

Contigs count: 1001 Features count: 2568 rRNAs count: 0 tRNAs count: 15

Genome completeness

partial RP 26 / 55 MC: 1 BSCG 26 / 51 MC: 2 ASCG 9 / 38

Displaying items 701-750 of 1001 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_12420 Species: Microbacterium hominis (50%)	2	2476 bp	71.20	4.00	93.90
scnpilot_solids1_trim150_scaffold_14036 Species: Microbacterium mangrovi (50%)	2	2267 bp	66.78	4.83	86.55
scnpilot_solids1_trim150_scaffold_15556 Species: Microbacterium sp. MRS-1 (50%)	2	2103 bp	70.38	3.78	100.14
scnpilot_solids1_trim150_scaffold_13381 Species: Leifsonia aquatica (50%)	2	2344 bp	71.37	5.18	100.09
scnpilot_solids1_trim150_scaffold_38853 Species: Beutenbergia cavernae (50%)	2	1091 bp	69.29	4.81	96.52
scnpilot_solids1_trim150_scaffold_31966 Species: Microbacterium oleivorans (50%)	2	1258 bp	68.36	5.60	68.68
scnpilot_solids1_trim150_scaffold_27055 Species: Arthrobacter sp. PAMC25486 (50%)	2	1420 bp	68.73	4.01	100.14
scnpilot_solids1_trim150_scaffold_34594 Species: Agreia bicolorata (50%)	2	1188 bp	67.51	4.80	96.72
scnpilot_solids1_trim150_scaffold_33418 Species: Curtobacterium flaccumfaciens (50%)	2	1218 bp	70.36	4.06	100.25
scnpilot_solids1_trim150_scaffold_43075 Species: Arthrobacter phenanthrenivorans (100%)	2	1010 bp	66.63	3.27	87.33
scnpilot_solids1_trim150_scaffold_24499 Species: Arthrobacter phenanthrenivorans (50%)	2	1524 bp	66.93	4.72	100.00
scnpilot_solids1_trim150_scaffold_31459 Species: Microbacterium sp. MRS-1 (50%)	2	1272 bp	66.75	3.54	85.61
scnpilot_solids1_trim150_scaffold_20564 Species: Arthrobacter phenanthrenivorans (100%)	2	1727 bp	68.33	3.82	83.56
scnpilot_solids1_trim150_scaffold_26916 Species: Microbacterium ginsengisoli (50%)	2	1425 bp	70.53	3.89	99.79
scnpilot_solids1_trim150_scaffold_24756 Species: Arthrobacter sp. AK-YN10 (100%)	2	1513 bp	67.35	3.17	100.13
scnpilot_solids1_trim150_scaffold_19948 Species: Arthrobacter nitrophenolicus (50%)	2	1764 bp	69.84	4.08	80.27
scnpilot_solids1_trim150_scaffold_20567 Species: Microbacterium sp. MRS-1 (50%)	2	1727 bp	71.86	4.52	91.20
scnpilot_solids1_trim150_scaffold_27831 Species: Arthrobacter phenanthrenivorans (100%)	2	1390 bp	66.62	3.67	97.99
scnpilot_solids1_trim150_scaffold_23671 Species: Microbacterium azadirachtae (50%)	2	1564 bp	66.82	4.89	88.81
scnpilot_solids1_trim150_scaffold_21751 Species: Microbacterium oxydans (50%)	2	1659 bp	70.40	5.15	86.98
scnpilot_solids1_trim150_scaffold_39072 Species: Arthrobacter nitrophenolicus (50%)	2	1086 bp	71.64	4.01	93.92
scnpilot_solids1_trim150_scaffold_15568 Species: Arthrobacter crystallopoietes (50%)	2	2103 bp	71.42	7.63	75.75
scnpilot_solids1_trim150_scaffold_37067 Species: Rathayibacter toxicus (50%)	2	1130 bp	68.50	5.31	75.40
scnpilot_solids1_trim150_scaffold_16995 Species: Microbacterium sp. MRS-1 (50%)	2	1974 bp	72.64	6.91	94.98
scnpilot_solids1_trim150_scaffold_36692 Species: Arthrobacter phenanthrenivorans (100%)	2	1139 bp	67.43	3.95	100.09
scnpilot_solids1_trim150_scaffold_40765 Species: Microbacterium mangrovi (50%)	2	1052 bp	69.01	2.57	95.25
scnpilot_solids1_trim150_scaffold_27837 Species: Microbacterium azadirachtae (50%)	2	1390 bp	71.58	3.88	100.14
scnpilot_solids1_trim150_scaffold_34861 Species: Microbacterium hominis (50%)	2	1182 bp	68.10	4.95	82.74
scnpilot_solids1_trim150_scaffold_42278 Species: Intrasporangium chromatireducens (50%)	2	1025 bp	69.46	3.66	100.39
scnpilot_solids1_trim150_scaffold_32374 Species: Arthrobacter crystallopoietes (50%)	2	1246 bp	73.03	4.82	100.16
scnpilot_solids1_trim150_scaffold_29774 Species: Microbacterium sp. TS-1 (50%)	2	1324 bp	70.69	4.31	98.79
scnpilot_solids1_trim150_scaffold_30038 Species: Arthrobacter siccitolerans (50%)	2	1316 bp	71.35	4.10	88.68
scnpilot_solids1_trim150_scaffold_32119 Species: Tetrasphaera jenkinsii (50%)	2	1253 bp	71.11	7.18	74.70
scnpilot_solids1_trim150_scaffold_42280 Species: Microbacterium sp. TS-1 (50%)	2	1024 bp	71.39	4.54	99.61
scnpilot_solids1_trim150_scaffold_15320 Species: Microbacterium sp. TS-1 (50%)	2	2128 bp	70.35	6.34	69.22
scnpilot_solids1_trim150_scaffold_28344 Species: Microbacterium ginsengisoli (50%)	2	1372 bp	70.26	3.94	87.90
scnpilot_solids1_trim150_scaffold_21505 Species: Microbacterium oxydans (50%)	2	1672 bp	69.80	6.28	100.12
scnpilot_solids1_trim150_scaffold_40258 Species: Microbacterium testaceum (50%)	2	1062 bp	67.51	5.79	96.61
scnpilot_solids1_trim150_scaffold_35306 Species: Arthrobacter chlorophenolicus (50%)	2	1171 bp	68.49	3.07	89.15
scnpilot_solids1_trim150_scaffold_20834 Species: Georgenia sp. SUBG003 (50%)	2	1710 bp	68.25	5.00	89.12
scnpilot_solids1_trim150_scaffold_27074 Species: Microbacterium oleivorans (50%)	2	1419 bp	70.54	4.12	100.00
scnpilot_solids1_trim150_scaffold_18882 Species: Arthrobacter sp. AK-YN10 (50%)	2	1832 bp	67.25	5.57	88.76
scnpilot_solids1_trim150_scaffold_23171 Species: Microbacterium sp. CH12i (50%)	2	1587 bp	71.27	5.10	94.33
scnpilot_solids1_trim150_scaffold_30555 Species: Microbacterium sp. C448 (50%)	2	1301 bp	69.64	4.84	100.31
scnpilot_solids1_trim150_scaffold_27588 Species: Microbacterium laevaniformans (50%)	2	1398 bp	70.46	3.54	58.15
scnpilot_solids1_trim150_scaffold_38109 Species: Curtobacterium flaccumfaciens (50%)	2	1106 bp	67.99	3.12	80.56
scnpilot_solids1_trim150_scaffold_40006 Species: Microbacterium testaceum (50%)	2	1067 bp	69.54	5.48	44.70
scnpilot_solids1_trim150_scaffold_29015 Species: Microbacterium hominis (50%)	2	1348 bp	69.07	7.01	100.15
scnpilot_solids1_trim150_scaffold_26424 Species: Microbacterium azadirachtae (50%)	2	1445 bp	70.93	7.27	91.97
scnpilot_solids1_trim150_scaffold_8288 Species: Microbacterium azadirachtae (50%)	2	3314 bp	67.98	5.61	84.55

Displaying items 701-750 of 1001 in total

SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

SCNPILOT_SOLID_1_TRIM150_Microbacterium_70_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

SCNPILOT_SOLID_1_TRIM150_Microbacterium_70_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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