ggKbase | organisms

Consensus taxonomy: Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Curated version: solids_Micrococcales_1

Properties

Avg. coverage: 4.78 Longest contig: 8.51 Kbp Bin length: 1.90 Mbp GC content: 69.60 %

Contigs count: 1001 Features count: 2568 rRNAs count: 0 tRNAs count: 15

Genome completeness

partial RP 26 / 55 MC: 1 BSCG 26 / 51 MC: 2 ASCG 9 / 38

Displaying items 751-800 of 1001 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_16241 Species: Beutenbergia cavernae (50%)	2	2038 bp	66.68	3.53	93.77
scnpilot_solids1_trim150_scaffold_19457 Species: Microbacterium hominis (50%)	2	1795 bp	72.65	6.18	89.25
scnpilot_solids1_trim150_scaffold_29017 Species: Arthrobacter phenanthrenivorans (50%)	2	1348 bp	68.32	3.12	99.70
scnpilot_solids1_trim150_scaffold_37338 Species: Arthrobacter phenanthrenivorans (50%)	2	1124 bp	67.44	4.80	99.56
scnpilot_solids1_trim150_scaffold_37594 Species: Microbacterium mangrovi (50%)	2	1118 bp	70.93	4.43	96.33
scnpilot_solids1_trim150_scaffold_20074 Species: Curtobacterium flaccumfaciens (50%)	2	1758 bp	68.20	4.10	76.62
scnpilot_solids1_trim150_scaffold_25722 Species: Microbacterium ginsengisoli (50%)	2	1474 bp	71.03	4.99	87.31
scnpilot_solids1_trim150_scaffold_20844 Species: Microbacterium mangrovi (50%)	2	1710 bp	68.89	5.53	95.79
scnpilot_solids1_trim150_scaffold_25212 Species: Arthrobacter phenanthrenivorans (50%)	2	1494 bp	66.87	4.52	95.38
scnpilot_solids1_trim150_scaffold_40013 Species: Microbacterium mangrovi (100%)	2	1067 bp	66.73	3.66	80.69
scnpilot_solids1_trim150_scaffold_41749 Species: Arthrobacter phenanthrenivorans (50%)	2	1033 bp	67.86	3.48	90.90
scnpilot_solids1_trim150_scaffold_20078 Species: Microbacterium mangrovi (50%)	2	1758 bp	66.72	5.72	89.25
scnpilot_solids1_trim150_scaffold_32390 Species: Microbacterium mangrovi (50%)	2	1245 bp	73.17	4.10	97.83
scnpilot_solids1_trim150_scaffold_21774 Species: Microbacterium mangrovi (100%)	2	1658 bp	68.03	5.43	99.88
scnpilot_solids1_trim150_scaffold_31743 Species: Arthrobacter phenanthrenivorans (100%)	2	1264 bp	67.48	4.51	100.16
scnpilot_solids1_trim150_scaffold_30567 Species: Arthrobacter sp. SPG23 (50%)	2	1300 bp	68.15	3.46	80.31
scnpilot_solids1_trim150_scaffold_21520 Species: Leifsonia aquatica (50%)	2	1672 bp	70.28	5.11	86.30
scnpilot_solids1_trim150_scaffold_36713 Species: Arthrobacter phenanthrenivorans (50%)	2	1138 bp	67.49	3.95	82.51
scnpilot_solids1_trim150_scaffold_29282 Species: Arthrobacter phenanthrenivorans (100%)	2	1340 bp	69.25	3.69	100.08
scnpilot_solids1_trim150_scaffold_17178 Species: Arthrobacter phenanthrenivorans (100%)	2	1959 bp	68.81	4.29	95.56
scnpilot_solids1_trim150_scaffold_37348 Species: Arthrobacter phenanthrenivorans (100%)	2	1123 bp	68.30	3.21	86.82
scnpilot_solids1_trim150_scaffold_19212 Species: Microbacterium mangrovi (50%)	2	1811 bp	68.42	4.80	93.76
scnpilot_solids1_trim150_scaffold_28620 Species: Intrasporangium chromatireducens (50%)	2	1362 bp	68.58	4.96	85.46
scnpilot_solids1_trim150_scaffold_34629 Species: Microbacterium ginsengisoli (50%)	2	1187 bp	71.19	4.30	88.71
scnpilot_solids1_trim150_scaffold_13165 Species: Microbacterium testaceum (50%)	2	2371 bp	68.41	5.19	80.85
scnpilot_solids1_trim150_scaffold_40278 Species: Microbacterium mangrovi (50%)	2	1061 bp	67.39	4.95	77.19
scnpilot_solids1_trim150_scaffold_38382 Species: Microbacterium oxydans (50%)	2	1101 bp	71.48	5.18	96.46
scnpilot_solids1_trim150_scaffold_20855 Species: Arthrobacter phenanthrenivorans (100%)	2	1709 bp	68.05	4.65	99.71
scnpilot_solids1_trim150_scaffold_27351 Species: Microbacterium mangrovi (100%)	2	1408 bp	69.32	6.61	84.38
scnpilot_solids1_trim150_scaffold_32911 Species: Microbacterium testaceum (50%)	2	1231 bp	71.00	4.39	75.55
scnpilot_solids1_trim150_scaffold_12720 Species: Microbacterium laevaniformans (50%)	2	2429 bp	68.18	4.38	100.29
scnpilot_solids1_trim150_scaffold_24793 Species: Microbacterium mangrovi (50%)	2	1511 bp	69.16	4.17	94.90
scnpilot_solids1_trim150_scaffold_34633 Species: Arthrobacter phenanthrenivorans (50%)	2	1187 bp	71.02	4.04	107.41
scnpilot_solids1_trim150_scaffold_19473 Species: Arthrobacter chlorophenolicus (50%)	2	1794 bp	68.78	5.18	99.83
scnpilot_solids1_trim150_scaffold_14593 Species: Microbacterium sp. CH12i (50%)	2	2204 bp	71.73	4.08	94.60
scnpilot_solids1_trim150_scaffold_39105 Species: Arthrobacter phenanthrenivorans (100%)	2	1086 bp	68.60	5.11	78.73
scnpilot_solids1_trim150_scaffold_18650 Species: Leifsonia aquatica (50%)	2	1846 bp	70.42	5.36	95.23
scnpilot_solids1_trim150_scaffold_38643 Species: Microbacterium sp. TS-1 (50%)	2	1095 bp	71.32	3.29	80.00
scnpilot_solids1_trim150_scaffold_11316 Species: Microbacterium sp. SA39 (50%)	2	2640 bp	73.22	6.08	94.20
scnpilot_solids1_trim150_scaffold_17444 Species: Microbacterium mangrovi (50%)	2	2581 bp	68.50	5.58	73.34
scnpilot_solids1_trim150_scaffold_24797 Species: Arthrobacter phenanthrenivorans (100%)	2	1511 bp	66.64	3.87	98.68
scnpilot_solids1_trim150_scaffold_29549 Species: Microbacterium ginsengisoli (50%)	2	1332 bp	70.05	5.52	93.92
scnpilot_solids1_trim150_scaffold_15861 Species: Leifsonia xyli (50%)	2	2076 bp	69.75	5.64	87.43
scnpilot_solids1_trim150_scaffold_42310 Species: Arthrobacter phenanthrenivorans (50%)	2	1024 bp	67.09	4.10	96.39
scnpilot_solids1_trim150_scaffold_29038 Species: Microbacterium mangrovi (50%)	2	1348 bp	66.84	4.45	87.91
scnpilot_solids1_trim150_scaffold_32919 Species: Microbacterium ginsengisoli (50%)	2	1230 bp	69.35	2.93	85.61
scnpilot_solids1_trim150_scaffold_23199 Species: Microbacterium mangrovi (100%)	2	1586 bp	72.95	5.49	96.28
scnpilot_solids1_trim150_scaffold_22695 Species: Microbacterium mangrovi (50%)	2	1611 bp	70.58	3.63	93.30
scnpilot_solids1_trim150_scaffold_42569 Species: Microbacterium azadirachtae (50%)	2	1019 bp	68.01	5.30	88.91
scnpilot_solids1_trim150_scaffold_41001 Species: Microbacterium sp. CH12i (50%)	2	1048 bp	69.85	5.15	100.19

Displaying items 751-800 of 1001 in total

SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

SCNPILOT_SOLID_1_TRIM150_Microbacterium_70_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

SCNPILOT_SOLID_1_TRIM150_Microbacterium_70_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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