ggKbase | organisms

Consensus taxonomy: Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Curated version: solids_Micrococcales_1

Properties

Avg. coverage: 4.78 Longest contig: 8.51 Kbp Bin length: 1.90 Mbp GC content: 69.60 %

Contigs count: 1001 Features count: 2568 rRNAs count: 0 tRNAs count: 15

Genome completeness

partial RP 26 / 55 MC: 1 BSCG 26 / 51 MC: 2 ASCG 9 / 38

Displaying items 801-850 of 1001 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_28890 Species: Arthrobacter phenanthrenivorans (100%)	2	1352 bp	67.31	3.55	90.09
scnpilot_solids1_trim150_scaffold_37363 Species: Arthrobacter phenanthrenivorans (100%)	2	1123 bp	68.03	4.27	99.64
scnpilot_solids1_trim150_scaffold_78916 Species: Microbacterium sp. CH12i (50%)	2	1140 bp	72.98	4.61	93.68
scnpilot_solids1_trim150_scaffold_14859 Species: Microbacterium mangrovi (50%)	2	2176 bp	68.24	5.93	88.65
scnpilot_solids1_trim150_scaffold_30587 Species: Arthrobacter phenanthrenivorans (100%)	2	1300 bp	66.62	3.58	87.23
scnpilot_solids1_trim150_scaffold_30332 Species: Arthrobacter phenanthrenivorans (50%)	2	1307 bp	67.71	4.13	87.22
scnpilot_solids1_trim150_scaffold_38141 Species: Arthrobacter chlorophenolicus (100%)	2	1105 bp	70.50	3.26	101.27
scnpilot_solids1_trim150_scaffold_15101 Species: Microbacterium sp. CH12i (50%)	2	2150 bp	72.19	4.47	84.70
scnpilot_solids1_trim150_scaffold_18917 Species: Microbacterium oleivorans (50%)	2	1830 bp	71.15	4.59	88.03
scnpilot_solids1_trim150_scaffold_26454 Species: Microbacterium mangrovi (100%)	2	1443 bp	70.48	5.41	100.00
scnpilot_solids1_trim150_scaffold_7934 Species: Microbacterium mangrovi (50%)	2	3421 bp	72.26	5.22	100.06
scnpilot_solids1_trim150_scaffold_13952 Species: Leifsonia aquatica (100%)	2	2275 bp	70.15	4.75	85.71
scnpilot_solids1_trim150_scaffold_33984 Species: Microbacterium mangrovi (50%)	2	1203 bp	68.25	4.36	90.77
scnpilot_solids1_trim150_scaffold_9026 Species: Microbacterium oleivorans (50%)	2	3112 bp	70.50	5.25	97.17
scnpilot_solids1_trim150_scaffold_39634 Species: Arthrobacter phenanthrenivorans (100%)	2	1075 bp	68.56	3.91	94.05
scnpilot_solids1_trim150_scaffold_22706 Species: Arthrobacter chlorophenolicus (100%)	2	1610 bp	68.45	4.38	99.69
scnpilot_solids1_trim150_scaffold_33986 Species: Microbacterium testaceum (50%)	2	1203 bp	67.33	4.74	97.51
scnpilot_solids1_trim150_scaffold_40043 Species: Arthrobacter siccitolerans (50%)	2	1066 bp	66.98	4.50	99.62
scnpilot_solids1_trim150_scaffold_29051 Species: Microbacterium ginsengisoli (50%)	2	1347 bp	68.00	3.67	70.16
scnpilot_solids1_trim150_scaffold_22963 Species: Microbacterium sp. SUBG005 (50%)	2	1598 bp	71.21	5.44	94.24
scnpilot_solids1_trim150_scaffold_21547 Species: Micrococcus luteus (50%)	2	1670 bp	70.60	4.58	82.99
scnpilot_solids1_trim150_scaffold_39380 Species: Microbacterium sp. C448 (50%)	2	1080 bp	70.37	5.97	99.44
scnpilot_solids1_trim150_scaffold_18156 Species: Microbacterium testaceum (50%)	2	1882 bp	69.82	4.30	85.92
scnpilot_solids1_trim150_scaffold_43645 Species: Microbacterium sp. CH12i (50%)	2	1001 bp	68.23	2.70	100.40
scnpilot_solids1_trim150_scaffold_26718 Species: Microbacterium sp. UCD-TDU (50%)	2	1433 bp	68.53	5.23	99.44
scnpilot_solids1_trim150_scaffold_34143 Species: Microbacterium maritypicum (50%)	2	1199 bp	71.39	4.25	93.58
scnpilot_solids1_trim150_scaffold_34399 Species: Microbacterium mangrovi (50%)	2	1193 bp	72.00	3.52	97.32
scnpilot_solids1_trim150_scaffold_30343 Species: Arthrobacter phenanthrenivorans (100%)	2	1307 bp	68.40	3.33	94.34
scnpilot_solids1_trim150_scaffold_32680 Species: Microbacterium sp. SA39 (100%)	2	1238 bp	70.84	4.48	100.08
scnpilot_solids1_trim150_scaffold_29568 Species: Microbacterium sp. SUBG005 (50%)	2	1331 bp	71.37	4.62	99.40
scnpilot_solids1_trim150_scaffold_27122 Species: Arthrobacter phenanthrenivorans (100%)	2	1417 bp	67.47	3.49	100.14
scnpilot_solids1_trim150_scaffold_38410 Species: Arthrobacter phenanthrenivorans (100%)	2	1100 bp	69.36	3.68	90.55
scnpilot_solids1_trim150_scaffold_21556 Species: Microbacterium mangrovi (100%)	2	1669 bp	68.90	5.30	100.12
scnpilot_solids1_trim150_scaffold_28908 Species: Leifsonia aquatica (50%)	2	1351 bp	73.13	4.33	93.26
scnpilot_solids1_trim150_scaffold_27893 Species: Microbacterium sp. SA39 (100%)	2	1387 bp	71.45	5.73	99.93
scnpilot_solids1_trim150_scaffold_15629 Species: Arthrobacter phenanthrenivorans (50%)	2	2098 bp	68.49	3.72	80.93
scnpilot_solids1_trim150_scaffold_20887 Species: Sinomonas sp. MUSC 117 (50%)	2	1706 bp	67.53	3.78	93.90
scnpilot_solids1_trim150_scaffold_26215 Species: Microbacterium testaceum (50%)	2	1453 bp	69.24	5.57	91.47
scnpilot_solids1_trim150_scaffold_40824 Species: Arthrobacter phenanthrenivorans (100%)	2	1051 bp	67.46	2.85	96.48
scnpilot_solids1_trim150_scaffold_38416 Species: Microbacterium sp. TS-1 (50%)	2	1100 bp	71.00	5.59	96.27
scnpilot_solids1_trim150_scaffold_22208 Species: Microbacterium sp. TS-1 (50%)	2	1636 bp	68.28	3.76	89.12
scnpilot_solids1_trim150_scaffold_18424 Species: Microbacterium ginsengisoli (50%)	2	1863 bp	67.53	5.23	89.86
scnpilot_solids1_trim150_scaffold_41283 Species: Microbacterium azadirachtae (100%)	2	1042 bp	71.11	3.89	97.60
scnpilot_solids1_trim150_scaffold_20892 Species: Microbacterium oleivorans (50%)	2	1706 bp	70.98	5.98	94.61
scnpilot_solids1_trim150_scaffold_43660 Species: Arthrobacter phenanthrenivorans (100%)	2	1001 bp	67.23	2.85	101.00
scnpilot_solids1_trim150_scaffold_17988 Species: Microbacterium mangrovi (50%)	2	1895 bp	70.61	5.94	98.94
scnpilot_solids1_trim150_scaffold_32181 Species: Microbacterium laevaniformans (50%)	2	1251 bp	72.34	5.40	69.30
scnpilot_solids1_trim150_scaffold_22214 Species: Microbacterium sp. TS-1 (50%)	2	1635 bp	68.56	5.14	100.18
scnpilot_solids1_trim150_scaffold_21566 Species: Microbacterium sp. C448 (50%)	2	1668 bp	67.39	4.68	95.32
scnpilot_solids1_trim150_scaffold_38167 Species: Arthrobacter phenanthrenivorans (100%)	2	1105 bp	67.51	3.53	99.10

Displaying items 801-850 of 1001 in total

SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

SCNPILOT_SOLID_1_TRIM150_Microbacterium_70_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

SCNPILOT_SOLID_1_TRIM150_Microbacterium_70_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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