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scnpilot_solids1_trim150_scaffold_2435

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2435_1
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..300)
DNA (300bp) protein (100aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_01395};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
acetyl-CoA carboxylase, carboxyl transferase subunit beta; K01963 acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2]
acetyl-CoA carboxylase carboxyl transferase subunit beta n=1 Tax=Dyella ginsengisoli RepID=UPI00034C9C6C
scnpilot_solids1_trim150_scaffold_2435_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(375..968)
DNA (594bp) protein (198aa)
Transmembrane protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWW9_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89574.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_2435_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(965..1582)
DNA (618bp) protein (206aa)
Electron transport protein SCO1/SenC n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDA4_9GAMM
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:EIL97445.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems
scnpilot_solids1_trim150_scaffold_2435_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1554..3053)
DNA (1500bp) protein (500aa)
Cytochrome c oxidase subunit I n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDA3_9GAMM
Cytochrome c oxidase subunit I {ECO:0000313|EMBL:EIL97444.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
heme/copper-type cytochrome/quinol oxidase, subunit 1
scnpilot_solids1_trim150_scaffold_2435_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3056..3601)
DNA (546bp) protein (182aa)
Cytochrome c oxidase subunit II n=1 Tax=Rhodanobacter denitrificans RepID=I4WWW6_9GAMM
heme/copper-type cytochrome/quinol oxidase, subunit 2
Heme/copper-type cytochrome/quinol oxidase, subunit 2 {ECO:0000313|EMBL:AGG89571.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_2435_6
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3807..4628)
DNA (822bp) protein (274aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00031177}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00108586};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
tryptophan synthase, alpha chain (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Rhodanobacter denitrificans RepID=M4NLA4_9GAMM
scnpilot_solids1_trim150_scaffold_2435_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4765..5976)
DNA (1212bp) protein (404aa)
tryptophan synthase, beta chain (EC:4.2.1.20)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Tryptophan synthase beta chain n=2 Tax=Rhodanobacter denitrificans RepID=M4NCT4_9GAMM
scnpilot_solids1_trim150_scaffold_2435_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6087..6977
DNA (891bp) protein (297aa)
LysR family transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4WVF3_9GAMM rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:EIM03445.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
trpI; trpBA operon transcriptional regulator, LysR family; TrpI rbh
scnpilot_solids1_trim150_scaffold_2435_9
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7037..8449
DNA (1413bp) protein (471aa)
D-2-hydroxyglutarate dehydrogenase {ECO:0000313|EMBL:CDM25708.1}; EC=1.1.99.2 {ECO:0000313|EMBL:CDM25708.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Oxidoreductase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VUR3_9GAMM
oxidoreductase
Displaying 9 items

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