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scnpilot_solids1_trim150_scaffold_148

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_148_1
unknown

Not on your lists

3..737
DNA (735bp) protein (245aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_148_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(723..1715)
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00036E4B78
Uncharacterized protein {ECO:0000313|EMBL:EIL96144.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_148_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1835..2866)
DNA (1032bp) protein (344aa)
MoxR-like ATPase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9K4_9GAMM
MoxR-like ATPase {ECO:0000313|EMBL:EIL96145.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
MoxR-like ATPase
scnpilot_solids1_trim150_scaffold_148_4
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2968..5307)
DNA (2340bp) protein (780aa)
Type IV pilus secretin PilQ/competence protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VS64_9GAMM
Pilus assembly protein PilP {ECO:0000313|EMBL:GAN45365.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
type IV pilus secretin PilQ/competence protein
scnpilot_solids1_trim150_scaffold_148_5
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5330..5848)
DNA (519bp) protein (173aa)
Type IV pilus assembly protein PilP n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9K6_9GAMM
Pilus assembly protein PilP {ECO:0000313|EMBL:GAN45366.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
Tfp pilus assembly protein PilP
scnpilot_solids1_trim150_scaffold_148_6
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5851..6516)
DNA (666bp) protein (222aa)
Fimbrial assembly membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WVW6_9GAMM
Fimbrial protein {ECO:0000313|EMBL:AHX15829.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Tfp pilus assembly protein PilO
scnpilot_solids1_trim150_scaffold_148_7
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6513..7319)
DNA (807bp) protein (269aa)
Tfp pilus assembly protein PilN n=1 Tax=Rhodanobacter denitrificans RepID=M4NJZ2_9GAMM
Tfp pilus assembly protein PilN
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_148_8
unknown

Not on your lists

comp(7319..7420)
DNA (102bp) protein (34aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_148_9
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7420..8478)
DNA (1059bp) protein (353aa)
fimbrial assembly protein n=1 Tax=Dyella japonica RepID=UPI0002D78188
Pilus assembly protein PilM {ECO:0000313|EMBL:GAN45369.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
type IV pilus assembly protein PilM
scnpilot_solids1_trim150_scaffold_148_10
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8982..11504
DNA (2523bp) protein (841aa)
penicillin-binding protein 1A n=1 Tax=Dyella ginsengisoli RepID=UPI000349E17D
Penicillin-binding protein {ECO:0000313|EMBL:KJV37346.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
penicillin-binding protein, 1A family
scnpilot_solids1_trim150_scaffold_148_11
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11704..12348
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9L1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:GAN45828.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_148_12
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12484..13770)
DNA (1287bp) protein (429aa)
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369, ECO:0000256|RuleBase:RU003370}; EC=2.3.3.16 {ECO:0000256|RuleBase:RU003370};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
citrate synthase I, hexameric type (EC:2.3.3.1)
type II citrate synthase n=1 Tax=Dyella ginsengisoli RepID=UPI00034CA2B5
scnpilot_solids1_trim150_scaffold_148_13
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14018..14269)
DNA (252bp) protein (84aa)
50S ribosomal protein L31 type B id=2556723 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
50S ribosomal protein L31 type B {ECO:0000256|HAMAP-Rule:MF_00502, ECO:0000256|SAAS:SAAS00004504}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
ribosomal protein L31
scnpilot_solids1_trim150_scaffold_148_14
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14348..16396)
DNA (2049bp) protein (683aa)
ATP-dependent DNA helicase RecG (EC:3.6.1.-)
ATP-dependent DNA helicase RecG n=1 Tax=Rhodanobacter denitrificans RepID=I4WVX4_9GAMM
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:GAN45370.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
scnpilot_solids1_trim150_scaffold_148_15
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16497..16883)
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036B8FAC
translation initiation inhibitor; K07567 TdcF protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
scnpilot_solids1_trim150_scaffold_148_16
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17075..19255)
DNA (2181bp) protein (727aa)
bifunctional (p)ppGpp synthetase II/ guanosine-3'''',5''''-bis pyrophosphate 3''''-pyrophosphohydrolase n=1 Tax=Dyella japonica RepID=UPI0003171CBA
(P)ppGpp synthetase {ECO:0000313|EMBL:GAN45372.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
(p)ppGpp synthetase, RelA/SpoT family
scnpilot_solids1_trim150_scaffold_148_17
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19759..20052)
DNA (294bp) protein (98aa)
DNA-directed RNA polymerase subunit omega; K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aur
DNA-directed RNA polymerase subunit omega n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L3V3_FRAAD
scnpilot_solids1_trim150_scaffold_148_18
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20256..21260
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037C0A0E rbh
Surface lipoprotein {ECO:0000313|EMBL:EIL98299.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
surface lipoprotein
scnpilot_solids1_trim150_scaffold_148_19
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21266..21601)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002E60685
Uncharacterized protein {ECO:0000313|EMBL:KGI76849.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
putative NTP binding protein (contains STAS domain)
scnpilot_solids1_trim150_scaffold_148_20
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21606..22256)
DNA (651bp) protein (217aa)
Organic solvent resistance ABC transporter auxiliary protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRK1_9GAMM
Toluene tolerance protein {ECO:0000313|EMBL:KGI76850.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
ABC-type transport system involved in resistance to organic solvents, auxiliary component
scnpilot_solids1_trim150_scaffold_148_21
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22304..22825)
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036F7BF1
Mammalian cell entry protein {ECO:0000313|EMBL:GAN45374.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
ABC-type transport system involved in resistance to organic solvents, periplasmic component
scnpilot_solids1_trim150_scaffold_148_22
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22846..23613)
DNA (768bp) protein (256aa)
ABC transporter permease n=1 Tax=Rudaea cellulosilytica RepID=UPI0003748F65 rbh
ABC transporter permease {ECO:0000313|EMBL:GAN45375.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_148_23
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23610..24449)
DNA (840bp) protein (280aa)
ABC-type transport system involved in resistance to organic solvents, ATPase component n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L3U7_FRAAD
Toluene ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAN45376.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
ABC-type transport system involved in resistance to organic solvents, ATPase component; K02065 putative ABC transport system ATP-binding protein
scnpilot_solids1_trim150_scaffold_148_24
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24505..25146)
DNA (642bp) protein (214aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2B9_9GAMM
scnpilot_solids1_trim150_scaffold_148_25
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25143..26003)
DNA (861bp) protein (287aa)
Uncharacterized protein {ECO:0000313|EMBL:GAN45378.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
Putative uncharacterized protein id=2556749 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria rbh
hypothetical protein
scnpilot_solids1_trim150_scaffold_148_26
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26074..26799
DNA (726bp) protein (242aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
RNAse PH (EC:2.7.7.56)
ribonuclease PH n=1 Tax=Dyella japonica RepID=UPI000370E75B
scnpilot_solids1_trim150_scaffold_148_27
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


26796..27449
DNA (654bp) protein (218aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae
nucleoside-triphosphate diphosphatase n=1 Tax=Dyella ginsengisoli RepID=UPI000345F11F
non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family
scnpilot_solids1_trim150_scaffold_148_28
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27547..28722
DNA (1176bp) protein (392aa)
HemN family oxidoreductase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W1A6_9GAMM
HemN family oxidoreductase {ECO:0000313|EMBL:EIL93247.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative oxygen-independent coproporphyrinogen III oxidase
scnpilot_solids1_trim150_scaffold_148_29
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28715..28897
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Pseudomonas viridiflava UASWS0038 RepID=K6BM83_PSEVI
Uncharacterized protein {ECO:0000313|EMBL:EYR68416.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_148_30

Not on your lists

29009..31237
DNA (2229bp) protein (743aa)
Protein containing DUF1631 n=2 Tax=mine drainage metagenome RepID=T0Y6S8_9ZZZZ rbh
Protein containing DUF1631 {ECO:0000313|EMBL:EQD27572.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Protein of unknown function (DUF1631)
Displaying items 1-30 of 64 in total

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