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scnpilot_solids1_trim150_scaffold_713

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_713_1
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..2460)
DNA (2460bp) protein (820aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIC4_9GAMM
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:KGI78301.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
scnpilot_solids1_trim150_scaffold_713_2

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comp(2631..3194)
DNA (564bp) protein (188aa)
Transcriptional regulator, TetR family protein n=3 Tax=mine drainage metagenome RepID=T1CM34_9ZZZZ
Transcriptional regulator, TetR family protein {ECO:0000313|EMBL:EQD69419.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
transcriptional regulator
scnpilot_solids1_trim150_scaffold_713_3
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3431..3859
DNA (429bp) protein (143aa)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
ndk; nucleoside diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6]
Nucleoside diphosphate kinase id=2715433 bin=GWF1_Xanthomonadales_69_6 species=Laribacter hongkongensis genus=Laribacter taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
scnpilot_solids1_trim150_scaffold_713_4

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3878..5008
DNA (1131bp) protein (377aa)
2-vinyl bacteriochlorophyllide hydratase; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
Ribosomal RNA large subunit methyltransferase N (Fragment) n=1 Tax=mine drainage metagenome RepID=T1BTR2_9ZZZZ rbh
Ribosomal RNA large subunit methyltransferase N {ECO:0000313|EMBL:EQD73252.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
scnpilot_solids1_trim150_scaffold_713_5
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4998..5807
DNA (810bp) protein (270aa)
Pilus biogenesis/stability type IV, PilW n=2 Tax=mine drainage metagenome RepID=T1CD45_9ZZZZ
Pilus assembly protein PilW {ECO:0000313|EMBL:AHX13080.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
type IV pilus biogenesis/stability protein PilW
scnpilot_solids1_trim150_scaffold_713_6
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5804..6763
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX36_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AHX13081.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_713_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6956..7621
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX37_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91778.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_713_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7618..8838
DNA (1221bp) protein (407aa)
Outer membrane protein assembly factor BamB n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WID1_9GAMM
Outer membrane protein assembly factor BamB {ECO:0000256|HAMAP-Rule:MF_00923}; Flags: Precursor;; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Beta-barrel assembly machine subunit BamB
scnpilot_solids1_trim150_scaffold_713_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8991..10391
DNA (1401bp) protein (467aa)
GTPase Der n=1 Tax=Rhodanobacter sp. 115 RepID=I4VRV5_9GAMM
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ribosome-associated GTPase EngA; K03977 GTP-binding protein
scnpilot_solids1_trim150_scaffold_713_10
Candidatus Accumulibacter sp. BA-92, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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10375..11082
DNA (708bp) protein (236aa)
Molybdenum cofactor guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316, ECO:0000256|SAAS:SAAS00049907}; Short=MoCo guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316};; EC=2.7.7.77 {ECO:0000256|HAMAP-Rule:MF_00316, ECO:0000256|SAAS:SAAS00049907};; GTP:molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Mo-MPT guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin-guanine dinucleotide synthase {ECO:0000256
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035DD644
molybdopterin-guanine dinucleotide biosynthesis protein A
scnpilot_solids1_trim150_scaffold_713_11
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11051..12292
DNA (1242bp) protein (414aa)
moeA1; molybdopterin biosynthesis protein MoeA; K03750 molybdopterin molybdotransferase [EC:2.10.1.1] rbh
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036CEF88 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN45708.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
scnpilot_solids1_trim150_scaffold_713_12
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12324..13451
DNA (1128bp) protein (376aa)
Molybdopterin biosynthesis protein MoeB n=1 Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CYD5_STEMA
Molybdopterin biosynthesis protein MoeB {ECO:0000313|EMBL:KGM56333.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
molybdopterin biosynthesis protein MoeB
scnpilot_solids1_trim150_scaffold_713_13
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13466..13759)
DNA (294bp) protein (98aa)
cell division protein DedD n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002D57A33
hypothetical protein; K09948 hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADV27252.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_solids1_trim150_scaffold_713_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13952..14809
DNA (858bp) protein (286aa)
5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WID3_9GAMM
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_713_15
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14877..16334
DNA (1458bp) protein (486aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
inosine 5''''-monophosphate dehydrogenase n=1 Tax=Dyella ginsengisoli RepID=UPI00034A3719
scnpilot_solids1_trim150_scaffold_713_16
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16479..18026
DNA (1548bp) protein (516aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
GMP synthase; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
GMP synthase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B59169
scnpilot_solids1_trim150_scaffold_713_17
unknown

Not on your lists

18023..18157
DNA (135bp) protein (45aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_713_18
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

18154..19143
DNA (990bp) protein (330aa)
undecaprenyl diphosphate synthase (EC:2.5.1.31); K12503 short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68] rbh
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=526227 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) (Thermus; silvanus).;"
Isoprenyl transferase n=1 Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7B9V2_MEISD rbh
scnpilot_solids1_trim150_scaffold_713_19
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19273..19950)
DNA (678bp) protein (226aa)
UPI0003D009E5 related cluster n=1 Tax=unknown RepID=UPI0003D009E5 rbh
FOG: WD40-like repeat {ECO:0000313|EMBL:CDY75149.1}; Uncharacterized protein {ECO:0000313|EMBL:KDR42695.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_713_20
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19998..20453)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000367F357
Activator of HSP90 ATPase {ECO:0000313|EMBL:GAN45005.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
Activator of Hsp90 ATPase 1 family protein
scnpilot_solids1_trim150_scaffold_713_21
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20500..21759)
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IW62_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EIF34964.1}; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_713_22
Burkholderia sp. CCGE1002, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21872..22660
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI00036D3719 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADG17486.1}; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1002).;"
scnpilot_solids1_trim150_scaffold_713_23
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

22720..23466
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WQZ3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AIC16808.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_713_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23558..23839
DNA (282bp) protein (94aa)
membrane protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036788D5
Uncharacterized protein {ECO:0000313|EMBL:KFC75509.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
signal peptide
scnpilot_solids1_trim150_scaffold_713_25
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23940..24410
DNA (471bp) protein (157aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F24AB0
cytosine/adenosine deaminase
scnpilot_solids1_trim150_scaffold_713_26
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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24519..26732
DNA (2214bp) protein (738aa)
BNR/Asp-box repeat protein n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F5I3_ACIC5
BNR/Asp-box repeat protein
BNR/Asp-box repeat protein {ECO:0000313|EMBL:ACO32902.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
Displaying 26 items

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