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scnpilot_solids1_trim150_scaffold_801

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_801_1
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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355..711
DNA (357bp) protein (119aa)
Transport-associated protein n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2LDV0_BURGS
Transport-associated protein
Transport-associated protein {ECO:0000313|EMBL:AEA61025.1}; TaxID=999541 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (strain BSR3).;"
scnpilot_solids1_trim150_scaffold_801_2
Burkholderia sp. TJI49, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

720..959
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. TJI49 RepID=F0GG14_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGC99581.1}; TaxID=987057 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. TJI49.;"
scnpilot_solids1_trim150_scaffold_801_3
Saccharophagus degradans, Saccharophagus, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1250..1414
DNA (165bp) protein (55aa)
UPF0391 membrane protein Sde_0270 n=1 Tax=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) RepID=Y270_SACD2
hypothetical protein
UPF0391 membrane protein Sde_0270 {ECO:0000255|HAMAP-Rule:MF_01361}; TaxID=203122 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Saccharophagus.;" source="Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024).;"
scnpilot_solids1_trim150_scaffold_801_4
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1438..2181)
DNA (744bp) protein (248aa)
Transcriptional regulator, ArsR family n=1 Tax=Pseudomonas fluorescens SS101 RepID=I4K532_PSEFL
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:EZP40688.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
putative ArsR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_801_5
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2392..2727
DNA (336bp) protein (112aa)
NIPSNAP family containing protein n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI00037F0FCD
Uncharacterized protein {ECO:0000313|EMBL:AHX12861.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
NIPSNAP family containing protein
scnpilot_solids1_trim150_scaffold_801_6
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2807..3379
DNA (573bp) protein (191aa)
nucleoside deaminase n=1 Tax=Dyella ginsengisoli RepID=UPI00034C3693
Nucleoside deaminase {ECO:0000313|EMBL:AIF47065.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
cytosine/adenosine deaminase
scnpilot_solids1_trim150_scaffold_801_7
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3448..4149
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035E42F5
Uncharacterized protein {ECO:0000313|EMBL:KGI77006.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_801_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4220..5782
DNA (1563bp) protein (521aa)
TGF-beta receptor type I/II extracellular region n=1 Tax=Rhodanobacter denitrificans RepID=I4WLJ8_9GAMM
amino acid/peptide transporter (peptide:H symporter)
Amino acid/peptide transporter (Peptide:H symporter) {ECO:0000313|EMBL:AGG88542.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_801_9
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5875..7593)
DNA (1719bp) protein (573aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00036DB3C1 rbh
PHP domain-containing protein; K02347 DNA polymerase (family X) rbh
PHP domain protein {ECO:0000313|EMBL:ADE15066.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
scnpilot_solids1_trim150_scaffold_801_10
Azotobacter chroococcum, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7612..8595)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B0FA6 rbh
Uncharacterized protein {ECO:0000313|EMBL:AJE19564.1}; TaxID=1328314 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter chroococcum NCIMB 8003.;"
Zinc-containing alcohol dehydrogenase superfamily
scnpilot_solids1_trim150_scaffold_801_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8621..9439)
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034C1F4E
universal stress protein UspA-like protein
Universal stress protein UspA-like protein {ECO:0000313|EMBL:AGG87736.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_801_12
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9823..10266)
DNA (444bp) protein (148aa)
HSP20/alpha crystallin family protein, molecular chaperone (Small heat shock protein) n=1 Tax=Rhodanobacter denitrificans RepID=I4WQG2_9GAMM
molecular chaperone (small heat shock protein)
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_801_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10432..13005
DNA (2574bp) protein (858aa)
Magnesium-translocating P-type ATPase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WG45_9GAMM
Magnesium-translocating P-type ATPase {ECO:0000313|EMBL:EIL98436.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
magnesium-translocating P-type ATPase
scnpilot_solids1_trim150_scaffold_801_14
unknown

Not on your lists

13101..13238
DNA (138bp) protein (46aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_801_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13370..14053
DNA (684bp) protein (228aa)
Putative periplasmic or secreted lipoprotein n=1 Tax=Rhodanobacter denitrificans RepID=I4WLM5_9GAMM
putative periplasmic or secreted lipoprotein
Putative periplasmic or secreted lipoprotein {ECO:0000313|EMBL:AGG88573.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_801_16
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14060..14524
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000347570B
Uncharacterized protein {ECO:0000313|EMBL:GAN45994.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_801_17
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14723..15151
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D7C44
putative universal stress protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_801_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15153..17732)
DNA (2580bp) protein (860aa)
Cation transporting P-type ATPase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU17_9GAMM
Cation transporting P-type ATPase {ECO:0000313|EMBL:EIM02959.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
P-type ATPase, translocating
scnpilot_solids1_trim150_scaffold_801_19

Not on your lists

comp(17773..18093)
DNA (321bp) protein (107aa)
Inner membrane protein YqjE n=1 Tax=uncultured organism PF32_9ZZZZ">RepID=M1PF32_9ZZZZ
Inner membrane protein YqjE {ECO:0000313|EMBL:AGF87283.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
scnpilot_solids1_trim150_scaffold_801_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18244..19452)
DNA (1209bp) protein (403aa)
3-oxoacyl-(acyl-carrier-protein) synthase (EC:2.3.1.41)
3-oxoacyl-(Acyl-carrier-protein) synthase {ECO:0000313|EMBL:AGG89989.1}; EC=2.3.1.41 {ECO:0000313|EMBL:AGG89989.1};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Beta-ketoacyl-[ACP] synthase I n=1 Tax=Rhodanobacter denitrificans RepID=I4WYI9_9GAMM
scnpilot_solids1_trim150_scaffold_801_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19454..20044)
DNA (591bp) protein (197aa)
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064161}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064166};; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA {ECO:0000256|HAMAP-Rule:MF_00405}; Beta-hydroxydecanoyl thioester dehydrase {ECO:0000256|HAMAP-Rule:MF_00405}; Trans-2-decenoyl-[acyl-carrier-protein] isomerase {ECO:0000256|HAMAP-Rule:MF_00405}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobact
beta-hydroxyacyl-(acyl carrier protein) dehydratase FabA (EC:4.2.1.59)
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0N7_9GAMM
scnpilot_solids1_trim150_scaffold_801_22
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20082..21191)
DNA (1110bp) protein (370aa)
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WTT2_PSEUU
Monooxygenase {ECO:0000313|EMBL:EZQ15016.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
Displaying 22 items

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