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scnpilot_solids1_trim150_scaffold_856

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_856_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..1645)
DNA (1644bp) protein (548aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WCZ6_9GAMM
scnpilot_solids1_trim150_scaffold_856_2
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2029..2331
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003679D4C
Uncharacterized protein {ECO:0000313|EMBL:KGI77003.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_856_3
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2328..2888
DNA (561bp) protein (187aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZF2_9GAMM
scnpilot_solids1_trim150_scaffold_856_4
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3047..4216)
DNA (1170bp) protein (390aa)
peptidase S1 n=1 Tax=Dyella japonica RepID=UPI000371757A
Peptidase S1 {ECO:0000313|EMBL:AIF47276.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
trypsin-like serine protease with C-terminal PDZ domain
scnpilot_solids1_trim150_scaffold_856_5

Not on your lists

4566..5162
DNA (597bp) protein (199aa)
Ubiquinol-cytochrome c reductase, iron-sulfur subunit domain protein {ECO:0000313|EMBL:EQD78264.1}; EC=1.10.2.2 {ECO:0000313|EMBL:EQD78264.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Ubiquinol-cytochrome c reductase, iron-sulfur subunit domain protein n=2 Tax=mine drainage metagenome RepID=T1DA02_9ZZZZ rbh
ubiquinol-cytochrome c reductase, iron-sulfur subunit
scnpilot_solids1_trim150_scaffold_856_6
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5162..6430
DNA (1269bp) protein (423aa)
cytochrome B n=1 Tax=Rudaea cellulosilytica RepID=UPI0003655BCA rbh
Cytochrome b {ECO:0000256|RuleBase:RU003385}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
cytochrome b subunit of the bc complex
scnpilot_solids1_trim150_scaffold_856_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6450..7190
DNA (741bp) protein (247aa)
Ubiquinol-cytochrome c reductase, cytochrome c1 subunit n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMB6_9GAMM
Ubiquinol-cytochrome c reductase, cytochrome c1 subunit {ECO:0000313|EMBL:EIL88357.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
cytochrome c1
scnpilot_solids1_trim150_scaffold_856_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7297..7926
DNA (630bp) protein (210aa)
Stringent starvation protein A n=1 Tax=Rhodanobacter sp. 115 RepID=I4W840_9GAMM
Stringent starvation protein A {ECO:0000313|EMBL:EIL95631.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
glutathione S-transferase
scnpilot_solids1_trim150_scaffold_856_9
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7941..8450
DNA (510bp) protein (170aa)
Stringent starvation protein B n=2 Tax=Vibrio RepID=D0M818_VIBSE
Uncharacterized protein {ECO:0000313|EMBL:KGM55947.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
stringent starvation protein B; K03600 stringent starvation protein B
scnpilot_solids1_trim150_scaffold_856_10
uncultured Thiohalocapsa sp. PB-PSB1, Thiohalocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8627..9091)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4JJH5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ESQ15901.1}; TaxID=1385625 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiohalocapsa; environmental samples.;" source="uncultured Thiohalocapsa sp. PB-PSB1.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_856_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9141..9590)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSA8_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIM02350.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_856_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9725..11821
DNA (2097bp) protein (699aa)
RelA/SpoT family (P)ppGpp synthetase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WC86_9GAMM
RelA/SpoT family (P)ppGpp synthetase {ECO:0000313|EMBL:EIL97077.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
(p)ppGpp synthetase, RelA/SpoT family
scnpilot_solids1_trim150_scaffold_856_13
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12312..13925
DNA (1614bp) protein (538aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000344C09E
Uncharacterized protein {ECO:0000313|EMBL:KGI77272.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_856_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13927..14805
DNA (879bp) protein (293aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSB1_9GAMM
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EIM02353.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
nucleoside-diphosphate-sugar epimerase
scnpilot_solids1_trim150_scaffold_856_15
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14864..15667
DNA (804bp) protein (268aa)
Putative uncharacterized protein n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13NM4_BURXL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE34315.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
scnpilot_solids1_trim150_scaffold_856_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15701..16636
DNA (936bp) protein (312aa)
Putative glycosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NE33_9GAMM
putative glycosyltransferase
Putative glycosyltransferase {ECO:0000313|EMBL:AGG87758.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_856_17
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16643..17272)
DNA (630bp) protein (210aa)
Uracil-DNA glycosylase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WHJ5_9GAMM
uracil-DNA glycosylase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_856_18
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17332..17877)
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036CD2D3
Transport-associated protein {ECO:0000313|EMBL:EGV19563.1}; Flags: Precursor;; TaxID=768671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocapsa.;" source="Thiocapsa marina 5811.;"
periplasmic or secreted lipoprotein
scnpilot_solids1_trim150_scaffold_856_19
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17901..18263)
DNA (363bp) protein (121aa)
UPF0102 protein UU7_14093 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVE8_9GAMM
UPF0102 protein LF63_0112505 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein; K07460 putative endonuclease
scnpilot_solids1_trim150_scaffold_856_20
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18260..19861)
DNA (1602bp) protein (534aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00037A83A9
Uncharacterized protein {ECO:0000313|EMBL:AIF46896.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
putative lipoprotein
Displaying 20 items

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