ggKbase home page

scnpilot_solids1_trim150_scaffold_1095

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1095_1

Not on your lists

comp(2..436)
DNA (435bp) protein (145aa)
Peptide chain release factor 2 n=1 Tax=mine drainage metagenome RepID=T1A5X8_9ZZZZ
Peptide chain release factor 2 {ECO:0000313|EMBL:EQD36279.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
peptide chain release factor 2; K02836 peptide chain release factor 2
scnpilot_solids1_trim150_scaffold_1095_2
unknown

Not on your lists

comp(525..659)
DNA (135bp) protein (45aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1095_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

747..1169
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VRH9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89820.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1095_4
unknown

Not on your lists

1202..1396
DNA (195bp) protein (65aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1095_5
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1421..1981)
DNA (561bp) protein (187aa)
NADPH-dependent FMN reductase n=1 Tax=Xanthomonas RepID=UPI0003616A63
NADPH-dependent FMN reductase {ECO:0000313|EMBL:AHX12685.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Putative oxidoreductase
scnpilot_solids1_trim150_scaffold_1095_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2036..2875)
DNA (840bp) protein (280aa)
Putative methyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NA25_9GAMM rbh
putative methyltransferase rbh
Putative methyltransferase {ECO:0000313|EMBL:AGG87230.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1095_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2978..4660)
DNA (1683bp) protein (561aa)
asparagine synthase, glutamine-hydrolyzing (EC:6.3.5.4)
Asparagine synthetase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8X8_9GAMM
Asparagine synthetase B {ECO:0000313|EMBL:EIL95919.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
scnpilot_solids1_trim150_scaffold_1095_8
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5013..5705
DNA (693bp) protein (231aa)
O-methyltransferase mdmC {ECO:0000313|EMBL:ELX09272.1}; EC=2.1.1.- {ECO:0000313|EMBL:ELX09272.1};; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
O-methyltransferase (EC:2.1.1.-)
O-methyltransferase mdmC n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PCC7_9BURK
scnpilot_solids1_trim150_scaffold_1095_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5644..7401)
DNA (1758bp) protein (586aa)
single-stranded-DNA-specific exonuclease RecJ; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIL4_9GAMM
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:EIL99305.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_1095_10
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7487..8401)
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIL5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KGI78305.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
regulatory protein
scnpilot_solids1_trim150_scaffold_1095_11
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8398..10290)
DNA (1893bp) protein (631aa)
glutathione ABC transporter ATP-binding protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003689068
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGI78306.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
ABC transporter ATPase; K06158 ATP-binding cassette, subfamily F, member 3
scnpilot_solids1_trim150_scaffold_1095_12
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10287..10763)
DNA (477bp) protein (159aa)
transcription elongation factor GreA n=1 Tax=Dyella ginsengisoli RepID=UPI000346892C
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
transcription elongation factor GreA
scnpilot_solids1_trim150_scaffold_1095_13
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10843..14106)
DNA (3264bp) protein (1088aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
Carbamoyl-phosphate synthase large chain n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTY0_9GAMM
carbamoyl-phosphate synthase, large subunit
scnpilot_solids1_trim150_scaffold_1095_14
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14169..14552)
DNA (384bp) protein (128aa)
Uncharacterized protein (Fragment) n=3 Tax=mine drainage metagenome RepID=T0ZKN3_9ZZZZ
hypothetical protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
scnpilot_solids1_trim150_scaffold_1095_15
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14555..15706)
DNA (1152bp) protein (384aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
carbamoyl phosphate synthase small subunit n=1 Tax=Dyella japonica RepID=UPI0002F90B3D
carbamoyl-phosphate synthase small subunit
scnpilot_solids1_trim150_scaffold_1095_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15885..16580
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034AAA6B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88947.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1095_17
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16841..17620
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000348D2F2
Uncharacterized protein {ECO:0000313|EMBL:AHX14744.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
scnpilot_solids1_trim150_scaffold_1095_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17704..18717
DNA (1014bp) protein (338aa)
Cytochrome C binding protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWF5_9GAMM
Cytochrome C binding protein {ECO:0000313|EMBL:EIL91546.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cyc4; hypothetical protein
scnpilot_solids1_trim150_scaffold_1095_19
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18972..20021
DNA (1050bp) protein (350aa)
Alpha/beta hydrolase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNR1_9GAMM
Alpha/beta hydrolase {ECO:0000313|EMBL:EIL88852.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1095_20
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20198..21427
DNA (1230bp) protein (410aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0003745C86
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
scnpilot_solids1_trim150_scaffold_1095_21
unknown

Not on your lists

21445..21924
DNA (480bp) protein (160aa)
seg id=721304 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
Displaying 21 items

View Taxonomy