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scnpilot_solids1_trim150_scaffold_1521

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1521_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..1047
DNA (1047bp) protein (349aa)
Amino acid transporter n=1 Tax=Rhodanobacter denitrificans RepID=M4NCV4_9GAMM
amino acid transporter
Amino acid transporter {ECO:0000313|EMBL:AGG88530.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1521_2
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1538..1864)
DNA (327bp) protein (109aa)
High potential iron-sulfur protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WQK0_9GAMM
High potential iron-sulfur protein {ECO:0000313|EMBL:KGI77968.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
High potential iron-sulfur protein
scnpilot_solids1_trim150_scaffold_1521_3
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1907..2641
DNA (735bp) protein (245aa)
Methylthioribulose-1-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_01677}; Short=MTRu-1-P dehydratase {ECO:0000256|HAMAP-Rule:MF_01677};; EC=4.2.1.109 {ECO:0000256|HAMAP-Rule:MF_01677};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
methylthioribulose-1-phosphate dehydratase (EC:4.2.1.109)
methylthioribulose-1-phosphate dehydratase n=1 Tax=Dyella ginsengisoli RepID=UPI0003472ECE
scnpilot_solids1_trim150_scaffold_1521_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2638..3183
DNA (546bp) protein (182aa)
Acireductone dioxygenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WLI1_9GAMM
hypothetical protein, contains double-stranded beta-helix domain
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1521_5
Pseudomonas sp. M47T1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3201..3686
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D8736
Membrane-flanked domain-containing protein {ECO:0000313|EMBL:EIK94541.1}; TaxID=1179778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. M47T1.;"
membrane-flanked domain-containing protein
scnpilot_solids1_trim150_scaffold_1521_6
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3683..4387
DNA (705bp) protein (235aa)
Enolase-phosphatase E1 {ECO:0000256|HAMAP-Rule:MF_01681}; EC=3.1.3.77 {ECO:0000256|HAMAP-Rule:MF_01681};; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase {ECO:0000256|HAMAP-Rule:MF_01681}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
Enolase-phosphatase E1 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WQJ7_9GAMM
acireductone synthase
scnpilot_solids1_trim150_scaffold_1521_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4384..5454
DNA (1071bp) protein (357aa)
Peptidase C13 family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WLH9_9GAMM
Peptidase C13 family
Peptidase C13 family {ECO:0000313|EMBL:AGG88525.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1521_8
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

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5451..6359
DNA (909bp) protein (303aa)
nucleotidyltransferase n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B5A8E3
Nucleotidyltransferase {ECO:0000313|EMBL:AKC83138.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1521_9
RIFOXYC12_FULL_Lentisphaerae_60_16_curated, Lentisphaerae, Bacteria

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6356..7453
DNA (1098bp) protein (366aa)
Phosphotransferase family protein n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AXL2_9BACT
hypothetical protein
Tax=RIFOXYC12_FULL_Lentisphaerae_60_16_curated
scnpilot_solids1_trim150_scaffold_1521_10
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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7600..8073
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031C40E5
2Fe-2S iron-sulfur cluster binding domain-containing protein
(2Fe-2S)-binding domain protein {ECO:0000313|EMBL:ABQ32196.1}; Flags: Precursor;; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
scnpilot_solids1_trim150_scaffold_1521_11
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8070..10415
DNA (2346bp) protein (782aa)
Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding {ECO:0000313|EMBL:EGO94320.1}; EC=1.3.99.16 {ECO:0000313|EMBL:EGO94320.1};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding protein n=2 Tax=Acidiphilium RepID=A5G2W3_ACICJ rbh
molybdopterin binding aldehyde oxidase and xanthine dehydrogenase rbh
scnpilot_solids1_trim150_scaffold_1521_12
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10456..11526
DNA (1071bp) protein (357aa)
xanthine dehydrogenase (EC:1.17.1.4)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003477E3A rbh
Uncharacterized protein {ECO:0000313|EMBL:AIF48094.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
scnpilot_solids1_trim150_scaffold_1521_13
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11523..12158
DNA (636bp) protein (212aa)
4-diphosphocytidyl-2c-methyl-d-erythritol synthase; K07141 molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034CEAFB
4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000313|EMBL:AHX13119.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
scnpilot_solids1_trim150_scaffold_1521_14
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12377..13405
DNA (1029bp) protein (343aa)
elaC; ribonuclease Z (EC:3.1.26.11)
Ribonuclease Z {ECO:0000313|EMBL:BAI96186.1}; EC=3.1.26.11 {ECO:0000313|EMBL:BAI96186.1};; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
Ribonuclease Z n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z0Q4_SPHJU
scnpilot_solids1_trim150_scaffold_1521_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13507..14154)
DNA (648bp) protein (216aa)
phosphoribosyl-AMP cyclohydrolase (EC:3.6.1.31 3.5.4.19)
Histidine biosynthesis bifunctional protein HisIE n=1 Tax=Rhodanobacter denitrificans RepID=M4NEY1_9GAMM
Histidine biosynthesis bifunctional protein HisIE {ECO:0000256|HAMAP-Rule:MF_01019, ECO:0000256|SAAS:SAAS00015509}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1521_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14151..14921)
DNA (771bp) protein (257aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
imidazole glycerol phosphate synthase subunit hisF (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRG6_9GAMM
scnpilot_solids1_trim150_scaffold_1521_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14915..15646)
DNA (732bp) protein (244aa)
1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino) imidazole-4-carboxamide isomerase (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WLH3_9GAMM
scnpilot_solids1_trim150_scaffold_1521_18
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15643..16227)
DNA (585bp) protein (195aa)
imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; K02501 glutamine amidotransferase [EC:2.4.2.-]
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8KYS5_FRAAD
scnpilot_solids1_trim150_scaffold_1521_19
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16224..17291)
DNA (1068bp) protein (356aa)
histidinol-phosphatase; K01089 imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
imidazoleglycerol-phosphate dehydratase n=1 Tax=Dyella japonica RepID=UPI00030642DB
Histidine biosynthesis bifunctional protein HisB {ECO:0000256|SAAS:SAAS00082593}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
scnpilot_solids1_trim150_scaffold_1521_20
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17288..18379)
DNA (1092bp) protein (364aa)
histidinol phosphate aminotransferase apoenzyme (EC:2.6.1.9)
histidinol-phosphate aminotransferase n=1 Tax=Dyella ginsengisoli RepID=UPI000347EC31
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1521_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18376..19704)
DNA (1329bp) protein (443aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Histidinol dehydrogenase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8F7_9GAMM
histidinol dehydrogenase
scnpilot_solids1_trim150_scaffold_1521_22
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19701..20591)
DNA (891bp) protein (297aa)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00079, ECO:0000256|SAAS:SAAS00046302}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_00079};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_00079};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_00079, ECO:0000256|SAAS:SAAS00046302};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
ATP phosphoribosyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W688_9GAMM
ATP phosphoribosyltransferase
scnpilot_solids1_trim150_scaffold_1521_23

Not on your lists

comp(20588..20860)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T1AGB3_9ZZZZ
TrpR like protein {ECO:0000313|EMBL:EQD40744.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
TrpR-related protein YerC/YecD
scnpilot_solids1_trim150_scaffold_1521_24
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21028..21435)
DNA (408bp) protein (136aa)
Histidine ammonia-lyase n=1 Tax=Rhodanobacter denitrificans RepID=I4WLN6_9GAMM
histidine ammonia-lyase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying 24 items

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