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scnpilot_solids1_trim150_scaffold_2045_1

Organism: SCNPILOT_SOLID_1_TRIM150_Xanthomonadales_66_9

near complete RP 45 / 55 MC: 4 BSCG 42 / 51 MC: 5 ASCG 11 / 38 MC: 2
Location: 2..700

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Dyella japonica RepID=UPI0002F18D2B similarity UNIREF
DB: UNIREF100
  • Identity: 94.8
  • Coverage: 232.0
  • Bit_score: 436
  • Evalue 1.20e-119
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.8
  • Coverage: 232.0
  • Bit_score: 436
  • Evalue 1.70e-119
sigma-70 family RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 95.3
  • Coverage: 232.0
  • Bit_score: 435
  • Evalue 8.70e-120

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Taxonomy

Dyella japonica → Dyella → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 699
AACCTGCGCCTCGTGATTTCGATCGCGAAGAAATACACCAACCGCGGCCTGCAATTCCTGGACCTGATCCAGGAAGGCAACATCGGCCTGATGAAGGCCGTGGACAAGTTCGAATACCGCCGCGGCTACAAGTTCTCGACCTACGCGACGTGGTGGATCCGCCAGGCCATCACGCGCTCGATCGCCGACCAGGCGCGCACCATCCGCATCCCGGTGCACATGATCGAGACCATCAACAAGTTGAACCGCATCAGCCGCCAGATGCTGCAGTTGTACGGCCGCGAACCGACGCCGGAAGAACTGGCCGTGGCGATGGAGATGCCCGAGGACAAGATCCGCAAGGTGTTGAAGATCGCCAAGGAACCGATCTCGATGGAAACCCCGATCGGCGACGACGAGGATTCGCACCTCGGCGATTTCATCGAGGACCAGAACGCGGGTTCCCCCGTGGAATCGGCGACCGATACCGGCCTCACCGAAACCGTGCGCGACGTGCTGGCGGGCCTGACGCCGCGCGAAGCCAAGGTGCTGCGCATGCGCTTCGGCATCGACATGAACACCGACCACACCCTGGAAGAGGTCGGCAAGCAGTTCGACGTCACCCGCGAACGCATCCGCCAGATAGAGGCCAAGGCGCTGCGCAAGCTGCGGCATCCGTCGCGCAGCGAGCAGTTGCGCTCGTTCCTCGACTTCGAGTAG
PROTEIN sequence
Length: 233
NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQLYGREPTPEELAVAMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDQNAGSPVESATDTGLTETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLDFE*