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scnpilot_solids1_trim150_scaffold_2045

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2045_1
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..700
DNA (699bp) protein (233aa)
RNA polymerase sigma factor RpoD n=1 Tax=Dyella japonica RepID=UPI0002F18D2B
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
sigma-70 family RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor
scnpilot_solids1_trim150_scaffold_2045_2
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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937..1758
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UFG8_9RHOB
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
scnpilot_solids1_trim150_scaffold_2045_trna_1
unknown

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1869..1942
DNA (74bp)
transferRNA Met
scnpilot_solids1_trim150_scaffold_2045_trna_2
unknown

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2061..2134
DNA (74bp)
transferRNA Met
scnpilot_solids1_trim150_scaffold_2045_3
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2151..4442)
DNA (2292bp) protein (764aa)
peptidase S41 n=1 Tax=Dyella japonica RepID=UPI0002DFDEA0
Peptidase S41 {ECO:0000313|EMBL:GAN45207.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
C-terminal processing peptidase
scnpilot_solids1_trim150_scaffold_2045_4
unknown

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4458..4727
DNA (270bp) protein (90aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_2045_5
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4623..5267)
DNA (645bp) protein (215aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source=
Lipoyltransferase n=2 Tax=mine drainage metagenome RepID=T0YML2_9ZZZZ rbh
lipoate-protein ligase B
scnpilot_solids1_trim150_scaffold_2045_6
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5287..5574)
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002E78DE4
Uncharacterized protein {ECO:0000313|EMBL:GAN45204.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2045_7
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5584..6882)
DNA (1299bp) protein (433aa)
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VQQ8_9GAMM
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:GAN45203.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
penicillin-binding protein 6
scnpilot_solids1_trim150_scaffold_2045_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7070..7984)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034CD61A
Rare lipoprotein A {ECO:0000313|EMBL:EIL98329.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
rare lipoprotein A
scnpilot_solids1_trim150_scaffold_2045_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7981..9012)
DNA (1032bp) protein (344aa)
Lytic murein transglycosylase B n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VQR0_9GAMM
Lytic murein transglycosylase B {ECO:0000313|EMBL:EIL89551.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
lytic murein transglycosylase B
scnpilot_solids1_trim150_scaffold_2045_10

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9544..9756
DNA (213bp) protein (71aa)
Type VI secretion protein, VC_A0107 family n=1 Tax=mine drainage metagenome RepID=T1CIR0_9ZZZZ
Type VI secretion protein, VC_A0107 family {ECO:0000313|EMBL:EQD66504.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein; K11901 type VI secretion system protein ImpB
Displaying 12 items

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