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scnpilot_solids1_trim150_scaffold_7858_1

Organism: SCNPILOT_SOLID_1_TRIM150_Xanthomonadales_66_9

near complete RP 45 / 55 MC: 4 BSCG 42 / 51 MC: 5 ASCG 11 / 38 MC: 2
Location: comp(196..1320)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.4
  • Coverage: 360.0
  • Bit_score: 525
  • Evalue 4.60e-146
Transcription-repair-coupling factor n=1 Tax=Rhodanobacter denitrificans RepID=I4WL90_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 71.4
  • Coverage: 360.0
  • Bit_score: 528
  • Evalue 5.00e-147
transcription-repair coupling factor Mfd similarity KEGG
DB: KEGG
  • Identity: 71.4
  • Coverage: 360.0
  • Bit_score: 525
  • Evalue 1.00e-146

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Taxonomy

Rhodanobacter denitrificans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1125
ATGCCCGAAACCGACATCCCGATTCCCGCGTTGCCGCGCAGTCCCGGCCAGCAACGCGACTGGCGCGAACCCGCGGGGTCGTCGCTGGCGCTGCTGTTGTGCGAAGCGGCGCGCCAGCGCGATGGCGTGATCGTCGCGGTCACCGCCGACAGCCGTGCGGCGCGCACGCTGGAAGACGAACTGGGCGTGTTCGCCGACGGCTTGCCGGTCCTGCACTTTCCGGATTGGGAAACCCTGCCCTACGATTTGTTCGCGCCGCATCCGCAACTGGTGTCGCAACGCATCGATACCTTGTACCGCCTGCCCGCCACCCGCAAGGGGGTGCTGGTGGTGCCGGTCGCCACGTTGATGCAACGCCTGGCGCCGCGCTCGCACATCGCGGGCAGCGGGCTGGCCGTCGCGCGCGGCCAGCAGCTCGACCTGGCGGACGAGCAGCGCCGCCTCGAAACCTGCGGCTACCGGCATGTTCCGCAGGTCGGCGAACACGGCGAGTTCGCCGTGCGCGGCGCGTTGCTCGACGTCTTCCCGATGGGTGCGTCCGAACCCTACCGCATCGAGCTGTTCGACGACGCGATCGAATCCATCCGCGCCTTCGATCCGGAAACCCAGCGTTCGCTGCACCAGGTCGATGCGGTGAAACTGCTGCCCGCACGCGAATTCCCGCTCACCGACGAAGCCATGCGCGCGTTCCGCGATCGGTTGCGCGAGCGCTTTCCGATCGACGTGCGGCGCTGCCCGCTCTACCAGGACATGAAGCAGGGCGTGACCCCGAGCGGCATCGAGTATTACCTGCCGTTGTTTTTCGACGCCACCGAGAGCCTGTTCGACTATCTCGGCGACGACGCGCTGTTCGTGCTCGGGCGCGGTGCGCTCGAAGCCGCGGAACCCTTCTGGAAACAAACCGAAGCCCGTTACGACCAGCGCGCACACGACATCGAACGGCCGGTGCTGCCGCCGATGGAGTTGTACCTGCCGCCGCAATCATTGCGCGAACGCCTGAACAACGTGCTGCGCATCGACATCGTCGCGCCCGACGATCCCCGCGCCGTGGATACCGGCACCCAGGCGGCGCCCGACTTTTCGGCGGGCGGCCCCCAGGCCGGCCAGATCCAGAAAAACCCATAG
PROTEIN sequence
Length: 375
MPETDIPIPALPRSPGQQRDWREPAGSSLALLLCEAARQRDGVIVAVTADSRAARTLEDELGVFADGLPVLHFPDWETLPYDLFAPHPQLVSQRIDTLYRLPATRKGVLVVPVATLMQRLAPRSHIAGSGLAVARGQQLDLADEQRRLETCGYRHVPQVGEHGEFAVRGALLDVFPMGASEPYRIELFDDAIESIRAFDPETQRSLHQVDAVKLLPAREFPLTDEAMRAFRDRLRERFPIDVRRCPLYQDMKQGVTPSGIEYYLPLFFDATESLFDYLGDDALFVLGRGALEAAEPFWKQTEARYDQRAHDIERPVLPPMELYLPPQSLRERLNNVLRIDIVAPDDPRAVDTGTQAAPDFSAGGPQAGQIQKNP*