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scnpilot_solids1_trim150_scaffold_1379

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1379_1
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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1..213
DNA (213bp) protein (71aa)
MobA/MobL protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y565_NITMU
MobA/MobL protein
MobA/MobL protein {ECO:0000313|EMBL:ABB76106.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
scnpilot_solids1_trim150_scaffold_1379_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(637..1350)
DNA (714bp) protein (238aa)
Transposase n=1 Tax=Rhizobium sp. AP16 RepID=J2LKC9_9RHIZ rbh
Transposase {ECO:0000313|EMBL:AIL13783.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
transposase rbh
scnpilot_solids1_trim150_scaffold_1379_3

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comp(1474..1938)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Xanthomonas axonopodis pv. malvacearum str. GSPB1386 RepID=K8FSQ2_9XANT
Marine sediment metagenome DNA, contig: S12H4_C00127 {ECO:0000313|EMBL:GAI59947.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1379_4
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2099..2710)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9T9_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB74482.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
scnpilot_solids1_trim150_scaffold_1379_5
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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3062..3307
DNA (246bp) protein (82aa)
Sigma 54 modulation protein / S30EA ribosomal protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D8D1_SINAD
Ribosomal subunit interface protein {ECO:0000313|EMBL:KIA84776.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
Sigma 54 modulation protein / S30EA ribosomal protein
scnpilot_solids1_trim150_scaffold_1379_6
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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3329..3979
DNA (651bp) protein (217aa)
Channel protein, hemolysin III family n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YAS7_NITMU
hemolysin III family channel protein; K11068 hemolysin III
Channel protein, hemolysin III family {ECO:0000313|EMBL:ABB74144.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
scnpilot_solids1_trim150_scaffold_1379_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4226..5284)
DNA (1059bp) protein (353aa)
Membrane protein, putative n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUJ4_9PROT rbh
Membrane protein {ECO:0000313|EMBL:KIO50161.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1379_8
R_Gallionellales_60_31, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5449..6657)
DNA (1209bp) protein (403aa)
putative sensor/response regulator hybrid (EC:2.7.3.-)
histidine kinase n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI00036F880A
Tax=RIFCSPLOWO2_02_Gallionellales_60_31_curated
scnpilot_solids1_trim150_scaffold_1379_9
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7057..7266)
DNA (210bp) protein (70aa)
Cold-shock DNA-binding protein family n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YAS6_NITMU
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family)
Cold-shock DNA-binding protein family {ECO:0000313|EMBL:ABB74145.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
scnpilot_solids1_trim150_scaffold_1379_10
unknown

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7708..8022
DNA (315bp) protein (105aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1379_11
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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8019..8573
DNA (555bp) protein (185aa)
Resolvase-like n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y571_NITMU rbh
resolvase-like protein rbh
Resolvase-like {ECO:0000313|EMBL:ABB76100.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
scnpilot_solids1_trim150_scaffold_1379_12
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8646..8987)
DNA (342bp) protein (114aa)
Transcriptional regulator, XRE family n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y570_NITMU
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABB76101.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
scnpilot_solids1_trim150_scaffold_1379_13
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8962..9348)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y569_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB76102.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
scnpilot_solids1_trim150_scaffold_1379_14
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9505..10137
DNA (633bp) protein (211aa)
Plasmid partition protein ParA-like n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y568_NITMU rbh
plasmid partition protein ParA-like; K03496 chromosome partitioning protein rbh
Plasmid partition protein ParA-like {ECO:0000313|EMBL:ABB76103.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
scnpilot_solids1_trim150_scaffold_1379_15
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10130..10444
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Bordetella parapertussis (strain Bpp5) RepID=K0MPY1_BORPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCJ51894.1}; TaxID=1208660 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain Bpp5).;"
scnpilot_solids1_trim150_scaffold_1379_16
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10556..11788
DNA (1233bp) protein (411aa)
Plasmid replication initiator protein-like n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y567_NITMU rbh
plasmid replication initiator protein-like rbh
Plasmid replication initiator protein-like {ECO:0000313|EMBL:ABB76104.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
scnpilot_solids1_trim150_scaffold_1379_17
unknown

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12414..12623
DNA (210bp) protein (70aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1379_18
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12957..13388)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y566_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB76105.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Displaying 18 items

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