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scnpilot_solids1_trim150_scaffold_2025_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2025_curated_1
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

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2..1165
DNA (1164bp) protein (388aa)
hypothetical protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B720DE
acyltransferase 3
Peptidoglycan-N-acetylmuramate O-acetyltransferase {ECO:0000313|EMBL:ABK53229.1}; TaxID=351607 species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
scnpilot_solids1_trim150_scaffold_2025_curated_2
Nocardia farcinica, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1216..1440
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Nocardia farcinica (strain IFM 10152) RepID=Q5Z1S6_NOCFA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAD55615.1}; TaxID=247156 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia farcinica (strain IFM 10152).;"
scnpilot_solids1_trim150_scaffold_2025_curated_3
Nocardia farcinica, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1437..1757
DNA (321bp) protein (107aa)
Transcriptional modulator of MazE/toxin, MazF n=1 Tax=Saccharomonospora paurometabolica YIM 90007 RepID=G4IXR2_9PSEU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAD55614.1}; TaxID=247156 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia farcinica (strain IFM 10152).;"
scnpilot_solids1_trim150_scaffold_2025_curated_4
Streptomyces sp. PAMC26508, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1786..2217)
DNA (432bp) protein (144aa)
AclJ n=1 Tax=Streptomyces sp. PAMC26508 RepID=M9U0U3_9ACTO
aclJ; AclJ
AclJ {ECO:0000313|EMBL:AGJ59158.1}; TaxID=1265601 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. PAMC26508.;"
scnpilot_solids1_trim150_scaffold_2025_curated_5
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

2814..3095
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B34464
Uncharacterized protein {ECO:0000313|EMBL:CCF83446.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
scnpilot_solids1_trim150_scaffold_2025_curated_6
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3409..3603
DNA (195bp) protein (65aa)
acetyltransferase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B6FF25
hypothetical protein
GCN5 family acetyltransferase {ECO:0000313|EMBL:KKC25899.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
scnpilot_solids1_trim150_scaffold_2025_curated_7
Gordonia soli, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3975..5639)
DNA (1665bp) protein (555aa)
cysJ; NADPH--sulfite reductase flavoprotein alpha-component (EC:1.8.1.2); K00380 sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
CysJ n=1 Tax=Curtobacterium sp. B18 RepID=UPI00034AF5A5
NADPH--sulfite reductase flavoprotein alpha-component {ECO:0000313|EMBL:GAC70698.1}; TaxID=1223545 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia soli NBRC 108243.;"
scnpilot_solids1_trim150_scaffold_2025_curated_8
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5898..7394)
DNA (1497bp) protein (499aa)
hypothetical protein n=1 Tax=Dasania marina RepID=UPI0003787379
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
scnpilot_solids1_trim150_scaffold_2025_curated_9
Sanguibacter keddieii, Sanguibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7469..9166)
DNA (1698bp) protein (566aa)
Methyl-accepting chemotaxis protein n=1 Tax=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) RepID=D1BG32_SANKS
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:ACZ23549.1}; TaxID=446469 species="Bacteria; Actinobacteria; Micrococcales; Sanguibacteraceae; Sanguibacter.;" source="Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 /; ST-74).;"
scnpilot_solids1_trim150_scaffold_2025_curated_10
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9156..10529)
DNA (1374bp) protein (458aa)
Diguanylate phosphodiesterase n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4EVM3_MODMB
diguanylate phosphodiesterase
Diguanylate phosphodiesterase {ECO:0000313|EMBL:CCH87436.1}; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
scnpilot_solids1_trim150_scaffold_2025_curated_11
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10638..11522
DNA (885bp) protein (295aa)
Transcriptional regulator, LysR-family n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4EVM4_MODMB
LysR family transcriptional regulator
Transcriptional regulator, LysR-family {ECO:0000313|EMBL:CCH87437.1}; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
scnpilot_solids1_trim150_scaffold_2025_curated_12
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11517..12080)
DNA (564bp) protein (188aa)
Transcriptional regulator, XRE family n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X9Y4_NAKMY
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACV81184.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids1_trim150_scaffold_2025_curated_13
unknown

Not on your lists

comp(12542..12934)
DNA (393bp) protein (131aa)

This feature has no annotations

Displaying 13 items

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