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scnpilot_solids1_trim150_scaffold_8013_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_8013_curated_1
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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74..1633
DNA (1560bp) protein (520aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
ATP synthase F1 subunit alpha; K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14]
F0F1 ATP synthase subunit alpha n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036C0DFD
scnpilot_solids1_trim150_scaffold_8013_curated_2
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1652..2518
DNA (867bp) protein (289aa)
f0f1 ATP synthase subunit gamma (EC:3.6.3.14); K02115 F-type H+-transporting ATPase subunit gamma [EC:3.6.3.14]
ATP synthase gamma chain n=2 Tax=Acidovorax RepID=ATPG_ACIET
ATP synthase gamma chain {ECO:0000255|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000255|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000255|HAMAP-Rule:MF_00815}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_solids1_trim150_scaffold_8013_curated_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2551..3984
DNA (1434bp) protein (478aa)
ATP synthase F1 subunit beta; K02112 F-type H+-transporting ATPase subunit beta [EC:3.6.3.14]
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
ATP synthase subunit beta n=2 Tax=Alicycliphilus denitrificans RepID=E8TVK5_ALIDB
scnpilot_solids1_trim150_scaffold_8013_curated_4
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4068..4484
DNA (417bp) protein (139aa)
ATP synthase F1 subunit epsilon; K02114 F-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14]
ATP synthase epsilon chain n=2 Tax=Alicycliphilus denitrificans RepID=E8TVK6_ALIDB
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_solids1_trim150_scaffold_8013_curated_5
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4586..5116
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJN3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK89423.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_8013_curated_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5186..5749)
DNA (564bp) protein (188aa)
cytochrome c class I
Cytochrome c class I {ECO:0000313|EMBL:AEB82821.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Cytochrome c, class I id=1278693 bin=GWE1_Burkholderiales_65_30 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
scnpilot_solids1_trim150_scaffold_8013_curated_7
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5851..7299)
DNA (1449bp) protein (483aa)
RND efflux system, outer membrane lipoprotein, NodT family n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MBB6_ACIET
NodT family RND efflux system, outer membrane lipoprotein
RND efflux system, outer membrane lipoprotein, NodT family {ECO:0000313|EMBL:ACM31800.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids1_trim150_scaffold_8013_curated_8
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7313..10462)
DNA (3150bp) protein (1050aa)
acriflavine resistance protein B n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036B7815
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter {ECO:0000313|EMBL:GAD21828.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hydrophobe/amphiphile efflux-1 (HAE1) family transporter; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
scnpilot_solids1_trim150_scaffold_8013_curated_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10481..11734)
DNA (1254bp) protein (418aa)
membrane protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035C1972
Membrane-fusion protein {ECO:0000313|EMBL:GAD21829.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
RND family efflux transporter MFP subunit; K03585 membrane fusion protein
scnpilot_solids1_trim150_scaffold_8013_curated_10
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11908..12537
DNA (630bp) protein (210aa)
TetR family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035D2D4B
TetR family transcriptional regulator; K03577 TetR/AcrR family transcriptional regulator, acrAB operon repressor
Transcriptional regulator {ECO:0000313|EMBL:GAD21830.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_solids1_trim150_scaffold_8013_curated_11
Pandoraea sp. RB-44, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12758..12970)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Pandoraea sp. RB-44 RepID=V5UH63_9BURK
Uncharacterized protein {ECO:0000313|EMBL:AHB76850.1}; TaxID=1380774 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. RB-44.;"
scnpilot_solids1_trim150_scaffold_8013_curated_12
Pandoraea sp. RB-44, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13290..13679
DNA (390bp) protein (130aa)
Uncharacterized protein n=3 Tax=Pseudomonas aeruginosa RepID=U5AJN9_PSEAI
Thioredoxin {ECO:0000313|EMBL:AHB76845.1}; TaxID=1380774 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. RB-44.;"
Thioredoxin domain
scnpilot_solids1_trim150_scaffold_8013_curated_13
Pandoraea sp. RB-44, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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13676..13822
DNA (147bp) protein (49aa)
Cytochrome C biogenesis protein n=2 Tax=Pseudomonas aeruginosa RepID=V8DRU7_PSEAI
Cytochrome C biogenesis protein {ECO:0000313|EMBL:AHB76844.1}; TaxID=1380774 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. RB-44.;"
cytochrome c biogenesis protein transmembrane region
Displaying 13 items

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