ggKbase home page

scnpilot_solids1_trim150_scaffold_5285_curated

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_5285_curated_1
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..500)
DNA (498bp) protein (166aa)
tRNA 2-thiocytidine biosynthesis protein TtcA n=1 Tax=Acidovorax sp. (strain JS42) RepID=TTCA_ACISJ
C32 tRNA thiolase; K14058 tRNA 2-thiocytidine biosynthesis protein TtcA
tRNA 2-thiocytidine biosynthesis protein TtcA {ECO:0000255|HAMAP-Rule:MF_01850}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_solids1_trim150_scaffold_5285_curated_2
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(506..892)
DNA (387bp) protein (129aa)
dihydroneopterin aldolase; K01633 dihydroneopterin aldolase [EC:4.1.2.25]
Dihydroneopterin aldolase n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WVZ1_DELAC
Dihydroneopterin aldolase {ECO:0000313|EMBL:EPD43953.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
scnpilot_solids1_trim150_scaffold_5285_curated_3
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(904..1317)
DNA (414bp) protein (138aa)
dihydroneopterin aldolase; K01633 dihydroneopterin aldolase [EC:4.1.2.25]
Dihydroneopterin aldolase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MCI8_ACIET
Dihydroneopterin aldolase {ECO:0000313|EMBL:ACM31988.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids1_trim150_scaffold_5285_curated_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1314..2108)
DNA (795bp) protein (265aa)
Short-chain dehydrogenase/reductase SDR n=2 Tax=Alicycliphilus denitrificans RepID=E8TX95_ALIDB
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AEB82975.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_solids1_trim150_scaffold_5285_curated_5
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2186..2902)
DNA (717bp) protein (239aa)
ABC transporter (EC:3.6.3.-); K01996 branched-chain amino acid transport system ATP-binding protein
ABC transporter family protein 46 {ECO:0000313|EMBL:ADP16452.1}; EC=3.6.3.- {ECO:0000313|EMBL:ADP16452.1};; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000300A902
scnpilot_solids1_trim150_scaffold_5285_curated_6
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2899..3651)
DNA (753bp) protein (251aa)
ABC transporter n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0003146421
ABC transporter
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family {ECO:0000313|EMBL:ABE64376.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids1_trim150_scaffold_5285_curated_7
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3648..4595)
DNA (948bp) protein (316aa)
Putative high-affinity branched-chain amino acid transporter membrane protein n=2 Tax=Bordetella bronchiseptica RepID=K0MFP8_BORBM
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:KGD90088.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
high-affinity branched-chain amino acid transporter membrane protein
scnpilot_solids1_trim150_scaffold_5285_curated_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4592..5455)
DNA (864bp) protein (288aa)
branched-chain amino acid ABC transporter permease n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002FA8A3C
Uncharacterized protein {ECO:0000313|EMBL:EKS28638.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
inner-membrane translocator
scnpilot_solids1_trim150_scaffold_5285_curated_9
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5499..6710)
DNA (1212bp) protein (404aa)
amino acid ABC transporter substrate-binding protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002DA23E5
Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGD90086.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
branched-chain amino acid ABC transporter substrate-binding protein
scnpilot_solids1_trim150_scaffold_5285_curated_10
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6860..7942
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TX96_ALIDB
hypothetical protein
Type 12 methyltransferase {ECO:0000313|EMBL:GAO26284.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_solids1_trim150_scaffold_5285_curated_11
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7948..8142
DNA (195bp) protein (65aa)
UPI0003D3C645 related cluster n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI0003D3C645
Uncharacterized protein {ECO:0000313|EMBL:GAD22792.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_5285_curated_12
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8222..8662
DNA (441bp) protein (147aa)
thioredoxin; K03672 thioredoxin 2 [EC:1.8.1.8]
thioredoxin n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000369F4BF
Thioredoxin {ECO:0000313|EMBL:GAD20245.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_solids1_trim150_scaffold_5285_curated_13
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8634..9968)
DNA (1335bp) protein (445aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037D508E
Multifunctional CCA protein {ECO:0000256|HAMAP-Rule:MF_01261}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
polynucleotide adenylyltransferase/metal dependent phosphohydrolase
scnpilot_solids1_trim150_scaffold_5285_curated_14
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9907..10593)
DNA (687bp) protein (229aa)
glutathione S-transferase domain-containing protein; K04097 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase domain-containing protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0C4F4_9BURK
Glutathione S-transferase domain-containing protein {ECO:0000313|EMBL:EHL20511.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
scnpilot_solids1_trim150_scaffold_5285_curated_15
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10613..11185)
DNA (573bp) protein (191aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
5-formyltetrahydrofolate cyclo-ligase n=2 Tax=Acidovorax RepID=A1W3D3_ACISJ
5-formyltetrahydrofolate cyclo-ligase
scnpilot_solids1_trim150_scaffold_5285_curated_16
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11204..12136
DNA (933bp) protein (311aa)
lytic transglycosylase catalytic; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-]
Lytic transglycosylase catalytic n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G4M9_ALIDK
Lytic transglycosylase catalytic {ECO:0000313|EMBL:ADU98379.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Displaying 16 items

View Taxonomy