ggKbase home page

scnpilot_solids1_trim150_scaffold_2086_curated

Search features with annotation key words

Displaying 14 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2086_curated_1
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..815)
DNA (813bp) protein (271aa)
aminoglycoside phosphotransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037574AF
Predicted phosphotransferase related to Ser/Thr protein kinases {ECO:0000313|EMBL:GAD21182.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
aminoglycoside phosphotransferase; K07102
scnpilot_solids1_trim150_scaffold_2086_curated_2
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

994..3306
DNA (2313bp) protein (771aa)
LPS-assembly protein LptD n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035E6ECB
LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00019908}; Flags: Precursor;; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
organic solvent tolerance protein; K04744 LPS-assembly protein
scnpilot_solids1_trim150_scaffold_2086_curated_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3334..4764
DNA (1431bp) protein (477aa)
sura domain protein; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
Chaperone SurA n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TYR7_ALIDB
Chaperone SurA {ECO:0000256|HAMAP-Rule:MF_01183, ECO:0000256|SAAS:SAAS00043023}; Peptidyl-prolyl cis-trans isomerase SurA {ECO:0000256|HAMAP-Rule:MF_01183}; Rotamase SurA {ECO:0000256|HAMAP-Rule:MF_01183}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_solids1_trim150_scaffold_2086_curated_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4761..5558
DNA (798bp) protein (266aa)
dimethyladenosine transferase; K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-
Ribosomal RNA small subunit methyltransferase A n=2 Tax=Alicycliphilus denitrificans RepID=E8TYR6_ALIDB
scnpilot_solids1_trim150_scaffold_2086_curated_5
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5534..5665)
DNA (132bp) protein (44aa)
Putative uncharacterized protein n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KWS1_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGI75708.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2086_curated_6
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5740..6246)
DNA (507bp) protein (169aa)
UPI0003A69C8B related cluster n=1 Tax=unknown RepID=UPI0003A69C8B
Barstar {ECO:0000313|EMBL:GAD21178.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
barstar (barnase inhibitor)
scnpilot_solids1_trim150_scaffold_2086_curated_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6278..6682)
DNA (405bp) protein (135aa)
guanine-specific ribonuclease n1 and t1; K01167 ribonuclease T1 [EC:3.1.27.3]
Guanine-specific ribonuclease N1 and T1 n=2 Tax=Alicycliphilus denitrificans RepID=E8TYR4_ALIDB
Guanine-specific ribonuclease N1 and T1 {ECO:0000313|EMBL:ADV02073.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_solids1_trim150_scaffold_2086_curated_8
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6842..9154)
DNA (2313bp) protein (771aa)
malic enzyme (EC:1.1.1.40 2.3.1.8); K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
malic enzyme n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035D4F28
Malic enzyme {ECO:0000313|EMBL:GAD21176.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_solids1_trim150_scaffold_2086_curated_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9240..10397)
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035D2B13
FOG: GGDEF domain {ECO:0000313|EMBL:GAD21167.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
diguanylate cyclase
scnpilot_solids1_trim150_scaffold_2086_curated_10
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10462..11826)
DNA (1365bp) protein (455aa)
beta-alanine--pyruvate transaminase (EC:2.6.1.18); K00822 beta-alanine--pyruvate transaminase [EC:2.6.1.18]
beta alanine--pyruvate aminotransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036E3F12
Beta-alanine-pyruvate transaminase {ECO:0000313|EMBL:GAD22351.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_solids1_trim150_scaffold_2086_curated_11
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11917..12168
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J0U8Z0_9BURK
4Fe-4S ferredoxin
Uncharacterized protein {ECO:0000313|EMBL:EJE52577.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
scnpilot_solids1_trim150_scaffold_2086_curated_12
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12176..13048)
DNA (873bp) protein (291aa)
ABC transporter permease n=1 Tax=Ideonella sp. B508-1 RepID=UPI000348CED3
binding-protein-dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EAY63125.1}; TaxID=350702 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia PC184.;"
scnpilot_solids1_trim150_scaffold_2086_curated_13
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13063..13872)
DNA (810bp) protein (270aa)
mannosyltransferase n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003449744
ABC transporter family protein {ECO:0000313|EMBL:AIO33078.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
ABC transporter related
scnpilot_solids1_trim150_scaffold_2086_curated_14
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13874..14371)
DNA (498bp) protein (166aa)
nitrate ABC transporter substrate-binding protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI000344E3AB
nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein; K02051 NitT/TauT family transport system substrate-binding protein
ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein {ECO:0000313|EMBL:ABE35452.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
Displaying 14 items

View Taxonomy