ggKbase | organisms

Consensus taxonomy: Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Manually curated genome
Original version: SCNPILOT_SOLID_1_TRIM150_Burkholderiales_66_15

Properties

Avg. coverage: 1.00 Longest contig: 69.43 Kbp Bin length: 1.40 Mbp GC content: 65.94 %

Contigs count: 575 Features count: 1744 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 BSCG 18 / 51 ASCG 5 / 38

Displaying items 351-400 of 575 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_43013_curated Species: Acidovorax sp. MR-S7 (50%)	2	974 bp	61.40	1.00	72.07
scnpilot_solids1_trim150_scaffold_41227_curated Species: Acidovorax avenae (50%)	2	1024 bp	66.99	1.00	100.20
scnpilot_solids1_trim150_scaffold_22483_curated Species: RLO_Burkholderiales_65_40 (50%)	2	1572 bp	72.65	1.00	96.76
scnpilot_solids1_trim150_scaffold_39999_curated Species: Alicycliphilus denitrificans (50%)	2	1003 bp	61.02	1.00	96.31
scnpilot_solids1_trim150_scaffold_34309_curated Species: Acidovorax sp. NO-1 (100%)	2	1178 bp	66.89	1.00	99.07
scnpilot_solids1_trim150_scaffold_24868_curated Species: Alicycliphilus denitrificans (50%)	2	1393 bp	63.53	1.00	91.31
scnpilot_solids1_trim150_scaffold_29721_curated Species: Acidovorax sp. JS42 (50%)	2	1283 bp	67.65	1.00	96.57
scnpilot_solids1_trim150_scaffold_40701_curated Species: Acidovorax sp. MR-S7 (100%)	2	970 bp	69.38	1.00	99.59
scnpilot_solids1_trim150_scaffold_36355_curated Species: Delftia acidovorans (50%)	2	1036 bp	72.10	1.00	95.27
scnpilot_solids1_trim150_scaffold_23434_curated Species: Acidovorax sp. NO-1 (50%)	2	1464 bp	67.08	1.00	96.72
scnpilot_solids1_trim150_scaffold_6104_curated Species: Burkholderia sp. YI23 (50%)	2	4143 bp	67.51	1.00	83.06
scnpilot_solids1_trim150_scaffold_21757_curated Species: Castellaniella defragrans (50%)	2	1580 bp	67.34	1.00	79.37
scnpilot_solids1_trim150_scaffold_32750_curated Species: Alicycliphilus sp. B1 (50%)	2	1184 bp	68.75	1.00	98.82
scnpilot_solids1_trim150_scaffold_31566_curated Species: RLO_Burkholderiales_65_40 (50%)	2	1200 bp	71.08	1.00	100.25
scnpilot_solids1_trim150_scaffold_27373_curated Species: Acidovorax sp. JS42 (100%)	2	1331 bp	69.95	1.00	100.53
scnpilot_solids1_trim150_scaffold_21472_curated Species: Comamonas aquatica (50%)	2	1646 bp	66.22	1.00	97.87
scnpilot_solids1_trim150_scaffold_31160_curated Species: Variovorax paradoxus (50%)	2	1259 bp	68.39	1.00	98.17
scnpilot_solids1_trim150_scaffold_8879_curated Species: RLO_Burkholderiales_65_40 (50%)	2	3128 bp	68.16	1.00	100.70
scnpilot_solids1_trim150_scaffold_29261_curated Species: Acidovorax sp. JS42 (50%)	2	1326 bp	72.40	1.00	102.72
scnpilot_solids1_trim150_scaffold_29513_curated Species: Alicycliphilus denitrificans (50%)	2	1304 bp	65.57	1.00	95.25
scnpilot_solids1_trim150_scaffold_23322_curated Species: Acidovorax sp. CF316 (50%)	2	1545 bp	69.45	1.00	92.82
scnpilot_solids1_trim150_scaffold_28486_curated Species: Achromobacter sp. RTa (50%)	2	1303 bp	69.38	1.00	100.15
scnpilot_solids1_trim150_scaffold_35486_curated Species: Acidovorax sp. JS42 (100%)	2	1138 bp	73.37	1.00	98.86
scnpilot_solids1_trim150_scaffold_29545_curated Species: Alicycliphilus denitrificans (50%)	2	1285 bp	69.81	1.00	94.09
scnpilot_solids1_trim150_scaffold_12544_curated Species: Comamonas testosteroni (50%)	2	2440 bp	68.77	1.00	93.57
scnpilot_solids1_trim150_scaffold_34129_curated Species: Acidovorax sp. MR-S7 (50%)	2	1055 bp	66.54	1.00	94.12
scnpilot_solids1_trim150_scaffold_33094_curated Species: Acidovorax temperans (50%)	2	1218 bp	67.24	1.00	96.55
scnpilot_solids1_trim150_scaffold_35434_curated Species: Burkholderia sp. MSh2 (50%)	2	1153 bp	64.70	1.00	102.52
scnpilot_solids1_trim150_scaffold_20371_curated Species: Acidovorax ebreus (50%)	2	1706 bp	66.82	1.00	93.55
scnpilot_solids1_trim150_scaffold_28562_curated Species: Acidovorax sp. MR-S7 (50%)	2	1361 bp	73.92	1.00	99.19
scnpilot_solids1_trim150_scaffold_30444_curated Species: Castellaniella defragrans (50%)	2	1301 bp	70.79	1.00	87.16
scnpilot_solids1_trim150_scaffold_26475_curated Species: Herminiimonas arsenicoxydans (50%)	2	1386 bp	58.87	1.00	85.71
scnpilot_solids1_trim150_scaffold_30163_curated Species: Acidovorax delafieldii (50%)	2	1279 bp	68.96	1.00	97.81
scnpilot_solids1_trim150_scaffold_23784_curated Species: Alicycliphilus sp. B1 (100%)	2	1499 bp	67.85	1.00	91.26
scnpilot_solids1_trim150_scaffold_10356_curated Species: R_Burkholderiales_69_20 (50%)	2	2763 bp	58.67	1.00	92.29
scnpilot_solids1_trim150_scaffold_25474_curated Species: Alicycliphilus denitrificans (50%)	2	1425 bp	65.26	1.00	98.95
scnpilot_solids1_trim150_scaffold_15104_curated Species: Alicycliphilus denitrificans (50%)	2	2097 bp	69.96	1.00	99.14
scnpilot_solids1_trim150_scaffold_6945_curated Species: Acidovorax sp. CF316 (50%)	2	3732 bp	68.78	1.00	97.35
scnpilot_solids1_trim150_scaffold_30662_curated Species: Acidovorax avenae (50%)	2	1294 bp	66.69	1.00	99.69
scnpilot_solids1_trim150_scaffold_22391_curated Species: Acidovorax delafieldii (50%)	2	1583 bp	64.50	1.00	90.97
scnpilot_solids1_trim150_scaffold_23215_curated Species: Comamonas testosteroni (50%)	2	1568 bp	67.16	1.00	83.80
scnpilot_solids1_trim150_scaffold_42749_curated Species: Mastigocladus laminosus (50%)	2	931 bp	59.61	1.00	75.73
scnpilot_solids1_trim150_scaffold_35025_curated Species: Acidovorax avenae (50%)	2	1170 bp	67.61	1.00	100.77
scnpilot_solids1_trim150_scaffold_33297_curated Species: Acidovorax sp. MR-S7 (50%)	2	1210 bp	69.17	1.00	90.50
scnpilot_solids1_trim150_scaffold_34626_curated Species: Acidovorax avenae (50%)	2	1164 bp	68.04	1.00	96.65
scnpilot_solids1_trim150_scaffold_26656_curated Species: Massilia sp. LC238 (50%)	2	1321 bp	58.36	1.00	101.51
scnpilot_solids1_trim150_scaffold_32526_curated Species: Acidovorax delafieldii (50%)	2	1209 bp	64.10	1.00	89.08
scnpilot_solids1_trim150_scaffold_22917_curated Species: Alcaligenes faecalis (50%)	2	1507 bp	60.98	1.00	98.74
scnpilot_solids1_trim150_scaffold_22053_curated Species: Acidovorax sp. MR-S7 (50%)	2	1602 bp	64.61	1.00	95.88
scnpilot_solids1_trim150_scaffold_33207_curated Species: Variovorax paradoxus (50%)	2	1220 bp	67.87	1.00	91.72

Displaying items 351-400 of 575 in total

solids_Burkholderiales_3

SCNPILOT_SOLID_1_TRIM150_Burkholderiales_66_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

solids_Burkholderiales_3

SCNPILOT_SOLID_1_TRIM150_Burkholderiales_66_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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