ggKbase | organisms

Consensus taxonomy: Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Manually curated genome
Original version: SCNPILOT_SOLID_1_TRIM150_Burkholderiales_66_15

Properties

Avg. coverage: 1.00 Longest contig: 69.43 Kbp Bin length: 1.40 Mbp GC content: 65.94 %

Contigs count: 575 Features count: 1744 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 BSCG 18 / 51 ASCG 5 / 38

Displaying items 301-350 of 575 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_28330_curated Species: Lysobacter dokdonensis (50%)	2	1339 bp	63.33	1.00	83.57
scnpilot_solids1_trim150_scaffold_22583_curated Species: Burkholderia jiangsuensis (50%)	2	1556 bp	57.07	1.00	93.89
scnpilot_solids1_trim150_scaffold_33016_curated Species: Alicycliphilus sp. B1 (100%)	2	1190 bp	68.07	1.00	99.08
scnpilot_solids1_trim150_scaffold_42274_curated Species: Ralstonia pickettii (100%)	2	1001 bp	69.53	1.00	98.90
scnpilot_solids1_trim150_scaffold_36315_curated Species: Acidovorax sp. MR-S7 (50%)	2	1124 bp	64.32	1.00	88.88
scnpilot_solids1_trim150_scaffold_28365_curated Species: Comamonas testosteroni (50%)	2	1318 bp	67.68	1.00	84.22
scnpilot_solids1_trim150_scaffold_26869_curated Species: Acidovorax sp. MR-S7 (50%)	2	1380 bp	68.77	1.00	99.13
scnpilot_solids1_trim150_scaffold_25023_curated Species: Acidovorax sp. CF316 (50%)	2	1468 bp	64.10	1.00	95.84
scnpilot_solids1_trim150_scaffold_34140_curated Species: GWA2_Curvibacter_64_110_curated (50%)	2	1185 bp	67.17	1.00	99.75
scnpilot_solids1_trim150_scaffold_45386_curated Species: Verminephrobacter eiseniae (50%)	2	1188 bp	58.08	1.00	61.87
scnpilot_solids1_trim150_scaffold_41179_curated Species: Acidovorax sp. MR-S7 (50%)	2	1017 bp	67.06	1.00	90.56
scnpilot_solids1_trim150_scaffold_38198_curated Species: Castellaniella defragrans (100%)	2	1041 bp	65.42	1.00	92.51
scnpilot_solids1_trim150_scaffold_36743_curated Species: Delftia acidovorans (50%)	2	1074 bp	70.86	1.00	98.04
scnpilot_solids1_trim150_scaffold_39564_curated Species: Acidovorax delafieldii (50%)	2	1040 bp	69.71	1.00	92.88
scnpilot_solids1_trim150_scaffold_31839_curated Species: Variovorax paradoxus (50%)	2	1255 bp	70.28	1.00	91.31
scnpilot_solids1_trim150_scaffold_34780_curated Species: RIFOXYC2_FULL_Burkholderiales_59_8_curated (50%)	2	1176 bp	68.20	1.00	95.66
scnpilot_solids1_trim150_scaffold_19216_curated Species: Acidovorax sp. MR-S7 (50%)	2	1750 bp	67.54	1.00	99.77
scnpilot_solids1_trim150_scaffold_13340_curated Species: Acidovorax avenae (50%)	2	2280 bp	66.93	1.00	90.66
scnpilot_solids1_trim150_scaffold_22106_curated Species: Alicycliphilus sp. B1 (50%)	2	1620 bp	65.37	1.00	90.93
scnpilot_solids1_trim150_scaffold_13349_curated Species: Acidovorax sp. MR-S7 (50%)	2	2268 bp	67.42	1.00	97.35
scnpilot_solids1_trim150_scaffold_38976_curated Species: Acidovorax sp. JS42 (50%)	2	1033 bp	70.09	1.00	90.90
scnpilot_solids1_trim150_scaffold_31374_curated Species: BJP_08E140C01_10KDA_Burkholderiales_65_51 (50%)	2	1225 bp	73.47	1.00	100.16
scnpilot_solids1_trim150_scaffold_14688_curated Species: Acidovorax sp. JS42 (50%)	2	2182 bp	67.55	1.00	98.99
scnpilot_solids1_trim150_scaffold_21903_curated Species: Methylibium petroleiphilum (50%)	2	1624 bp	68.97	1.00	93.29
scnpilot_solids1_trim150_scaffold_23256_curated Species: Acidovorax sp. JS42 (50%)	2	1508 bp	64.32	1.00	100.27
scnpilot_solids1_trim150_scaffold_36804_curated Species: Acidovorax sp. JS42 (50%)	2	1131 bp	69.58	1.00	95.23
scnpilot_solids1_trim150_scaffold_14684_curated Species: Acidovorax sp. MR-S7 (100%)	2	2188 bp	66.54	1.00	94.47
scnpilot_solids1_trim150_scaffold_22356_curated Species: Achromobacter sp. RTa (50%)	2	1539 bp	62.77	1.00	89.28
scnpilot_solids1_trim150_scaffold_40083_curated Species: Burkholderia sp. lig30 (50%)	2	1060 bp	71.04	1.00	91.70
scnpilot_solids1_trim150_scaffold_20447_curated Species: Alicycliphilus denitrificans (100%)	2	1686 bp	69.04	1.00	98.75
scnpilot_solids1_trim150_scaffold_31989_curated Species: Acidovorax sp. JS42 (50%)	2	1229 bp	66.80	1.00	98.37
scnpilot_solids1_trim150_scaffold_36702_curated Species: Rubrivivax gelatinosus (50%)	2	1127 bp	52.09	1.00	41.26
scnpilot_solids1_trim150_scaffold_33999_curated Species: Acidovorax sp. MR-S7 (100%)	2	1165 bp	74.25	1.00	100.43
scnpilot_solids1_trim150_scaffold_16673_curated Species: Pandoraea pnomenusa (50%)	2	1987 bp	61.25	1.00	99.95
scnpilot_solids1_trim150_scaffold_24638_curated Species: Acidovorax sp. MR-S7 (50%)	2	1432 bp	66.13	1.00	86.73
scnpilot_solids1_trim150_scaffold_33884_curated Species: Acidovorax ebreus (50%)	2	1132 bp	66.08	1.00	96.20
scnpilot_solids1_trim150_scaffold_27062_curated Species: Acidovorax sp. JS42 (50%)	2	1377 bp	66.30	1.00	93.46
scnpilot_solids1_trim150_scaffold_40884_curated Species: Alicycliphilus denitrificans (50%)	2	976 bp	65.37	1.00	89.75
scnpilot_solids1_trim150_scaffold_28464_curated Species: R_Burkholderiales_64_960 (50%)	2	1335 bp	70.86	1.00	98.43
scnpilot_solids1_trim150_scaffold_22714_curated Species: Rhodoferax ferrireducens (50%)	2	1544 bp	68.33	1.00	90.74
scnpilot_solids1_trim150_scaffold_24200_curated Species: Alicycliphilus denitrificans (50%)	2	1495 bp	64.55	1.00	95.92
scnpilot_solids1_trim150_scaffold_26092_curated Species: Alicycliphilus sp. B1 (50%)	2	1389 bp	64.15	1.00	91.79
scnpilot_solids1_trim150_scaffold_43494_curated Species: Acidovorax ebreus (100%)	2	851 bp	69.57	1.00	88.84
scnpilot_solids1_trim150_scaffold_26638_curated Species: Acidovorax sp. MR-S7 (100%)	2	1390 bp	70.86	1.00	99.50
scnpilot_solids1_trim150_scaffold_41861_curated Species: Acidovorax sp. CF316 (50%)	2	982 bp	66.40	1.00	80.96
scnpilot_solids1_trim150_scaffold_22600_curated Species: Ralstonia pickettii (50%)	2	1534 bp	66.82	1.00	84.88
scnpilot_solids1_trim150_scaffold_38720_curated Species: Acidovorax sp. JS42 (50%)	2	1077 bp	70.38	1.00	100.00
scnpilot_solids1_trim150_scaffold_22970_curated Species: Alicycliphilus denitrificans (50%)	2	1554 bp	65.96	1.00	96.72
scnpilot_solids1_trim150_scaffold_29614_curated Species: Acidovorax sp. MR-S7 (50%)	2	1230 bp	66.99	1.00	96.59
scnpilot_solids1_trim150_scaffold_41666_curated Species: Acidovorax sp. JS42 (50%)	2	975 bp	69.33	1.00	95.69

Displaying items 301-350 of 575 in total

solids_Burkholderiales_3

SCNPILOT_SOLID_1_TRIM150_Burkholderiales_66_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

solids_Burkholderiales_3

SCNPILOT_SOLID_1_TRIM150_Burkholderiales_66_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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