ggKbase | organisms

Consensus taxonomy: Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Manually curated genome
Original version: SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_40_4

Properties

Avg. coverage: 1.00 Longest contig: 8.95 Kbp Bin length: 1.31 Mbp GC content: 39.03 %

Contigs count: 814 Features count: 1669 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 BSCG 11 / 51 ASCG 2 / 38

Displaying items 201-250 of 814 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_36869_curated Species: Pedobacter heparinus (50%)	2	955 bp	52.77	1.00	92.98
scnpilot_solids1_trim150_scaffold_41145_curated Species: Elizabethkingia miricola (100%)	2	963 bp	33.44	1.00	85.67
scnpilot_solids1_trim150_scaffold_34031_curated Species: Chryseobacterium piperi (100%)	2	1210 bp	39.83	1.00	92.73
scnpilot_solids1_trim150_scaffold_20789_curated Species: Flavobacterium branchiophilum (50%)	2	1711 bp	34.02	1.00	100.12
scnpilot_solids1_trim150_scaffold_14306_curated Species: Riemerella anatipestifer (50%)	2	2235 bp	35.62	1.00	49.80
scnpilot_solids1_trim150_scaffold_26217_curated Species: Flavobacterium sp. 316 (50%)	2	1346 bp	45.47	1.00	96.95
scnpilot_solids1_trim150_scaffold_23600_curated Species: Formosa sp. AK20 (50%)	2	1565 bp	45.81	1.00	94.12
scnpilot_solids1_trim150_scaffold_35572_curated Species: Galbibacter marinus (50%)	2	1161 bp	34.80	1.00	88.63
scnpilot_solids1_trim150_scaffold_29240_curated Species: Capnocytophaga canimorsus (50%)	2	1287 bp	37.37	1.00	35.90
scnpilot_solids1_trim150_scaffold_23607_curated Species: Flavobacterium psychrophilum (50%)	2	1509 bp	37.11	1.00	95.43
scnpilot_solids1_trim150_scaffold_26000_curated Species: Flavobacterium indicum (50%)	2	1302 bp	38.79	1.00	68.66
scnpilot_solids1_trim150_scaffold_27340_curated Species: Flavobacteriales bacterium BRH_c54 (50%)	2	1406 bp	41.89	1.00	99.64
scnpilot_solids1_trim150_scaffold_22928_curated Species: Pedobacter sp. NL19 (50%)	2	1458 bp	35.46	1.00	35.80
scnpilot_solids1_trim150_scaffold_25743_curated Species: Epilithonimonas lactis (50%)	2	1415 bp	38.09	1.00	89.47
scnpilot_solids1_trim150_scaffold_17303_curated Species: Fluviicola taffensis (50%)	2	1928 bp	35.58	1.00	77.65
scnpilot_solids1_trim150_scaffold_38199_curated Species: Chryseobacterium sp. P1-3 (50%)	2	1101 bp	40.33	1.00	80.11
scnpilot_solids1_trim150_scaffold_11307_curated Species: Fluviicola taffensis (50%)	2	2639 bp	40.66	1.00	94.01
scnpilot_solids1_trim150_scaffold_17291_curated Species: Flavobacterium suncheonense (100%)	2	1947 bp	37.49	1.00	85.98
scnpilot_solids1_trim150_scaffold_25801_curated Species: Zunongwangia profunda (50%)	2	1466 bp	41.47	1.00	95.57
scnpilot_solids1_trim150_scaffold_19421_curated Species: Winogradskyella psychrotolerans (50%)	2	1794 bp	35.01	1.00	98.50
scnpilot_solids1_trim150_scaffold_16916_curated Species: Chryseobacterium sp. JM1 (50%)	2	1803 bp	36.22	1.00	90.18
scnpilot_solids1_trim150_scaffold_6455_curated Species: uncultured Flavobacteriia bacterium (100%)	2	3978 bp	35.60	1.00	70.66
scnpilot_solids1_trim150_scaffold_39103_curated Species: Chryseobacterium formosense (50%)	2	965 bp	41.97	1.00	90.47
scnpilot_solids1_trim150_scaffold_31257_curated Species: Chryseobacterium formosense (50%)	2	1181 bp	32.01	1.00	99.07
scnpilot_solids1_trim150_scaffold_7489_curated Species: Fluviicola taffensis (50%)	2	3567 bp	44.63	1.00	93.94
scnpilot_solids1_trim150_scaffold_35159_curated Species: Flavobacterium johnsoniae (50%)	2	1171 bp	35.53	1.00	53.54
scnpilot_solids1_trim150_scaffold_21939_curated Species: Mangrovimonas yunxiaonensis (50%)	2	1647 bp	41.04	1.00	74.86
scnpilot_solids1_trim150_scaffold_37976_curated Species: Sporocytophaga myxococcoides (50%)	2	1046 bp	47.23	1.00	85.76
scnpilot_solids1_trim150_scaffold_36812_curated Species: Fluviicola taffensis (50%)	2	1133 bp	39.45	1.00	92.14
scnpilot_solids1_trim150_scaffold_31529_curated Species: Flavobacterium columnare (50%)	2	1215 bp	38.44	1.00	95.80
scnpilot_solids1_trim150_scaffold_36011_curated Species: Chryseobacterium sp. StRB126 (50%)	2	1073 bp	33.92	1.00	82.20
scnpilot_solids1_trim150_scaffold_7850_curated Species: Flavobacterium limnosediminis (50%)	2	3444 bp	41.81	1.00	64.46
scnpilot_solids1_trim150_scaffold_20550_curated Species: Croceibacter atlanticus (50%)	2	1712 bp	39.60	1.00	78.86
scnpilot_solids1_trim150_scaffold_20661_curated Species: Flavobacteriales bacterium BRH_c54 (50%)	2	1718 bp	34.23	1.00	93.42
scnpilot_solids1_trim150_scaffold_22636_curated Species: R_Fluviicola_43_260 (100%)	2	1553 bp	40.50	1.00	94.27
scnpilot_solids1_trim150_scaffold_24645_curated Species: Fluviicola taffensis (50%)	2	1500 bp	40.33	1.00	98.60
scnpilot_solids1_trim150_scaffold_21132_curated Species: Flavobacterium enshiense (50%)	2	1690 bp	37.99	1.00	99.76
scnpilot_solids1_trim150_scaffold_15446_curated Species: Joostella marina (50%)	2	1964 bp	39.05	1.00	95.32
scnpilot_solids1_trim150_scaffold_38383_curated Species: R_Fluviicola_43_260 (50%)	2	1098 bp	41.07	1.00	91.80
scnpilot_solids1_trim150_scaffold_16646_curated Species: Elizabethkingia miricola (50%)	2	1999 bp	37.82	1.00	65.58
scnpilot_solids1_trim150_scaffold_38987_curated Species: Algoriphagus machipongonensis (50%)	2	1085 bp	36.04	1.00	61.11
scnpilot_solids1_trim150_scaffold_39843_curated Species: Chryseobacterium solincola (50%)	2	1067 bp	33.55	1.00	19.40
scnpilot_solids1_trim150_scaffold_22734_curated Species: Flavobacterium sp. AED (50%)	2	1606 bp	46.45	1.00	97.14
scnpilot_solids1_trim150_scaffold_16885_curated Species: Flavobacteriales bacterium BRH_c54 (50%)	2	1920 bp	44.22	1.00	99.69
scnpilot_solids1_trim150_scaffold_18298_curated Species: Flavobacterium sp. 316 (50%)	2	1870 bp	47.97	1.00	96.74
scnpilot_solids1_trim150_scaffold_38811_curated Species: BJP_08E140C01_Flavobacteriales_35_8 (50%)	2	1089 bp	39.21	1.00	78.51
scnpilot_solids1_trim150_scaffold_29736_curated Species: Fluviicola taffensis (100%)	2	1323 bp	37.87	1.00	87.53
scnpilot_solids1_trim150_scaffold_34921_curated Species: Myroides odoratus (50%)	2	1095 bp	31.78	1.00	49.86
scnpilot_solids1_trim150_scaffold_41325_curated Species: R_Fluviicola_43_260 (50%)	2	1038 bp	35.65	1.00	87.86
scnpilot_solids1_trim150_scaffold_36264_curated Species: Nonlabens ulvanivorans (50%)	2	1156 bp	41.44	1.00	83.56

Displaying items 201-250 of 814 in total

solids_Flavobacteriales_1

SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_39_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

solids_Flavobacteriales_1

SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_39_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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