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SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_40_4

In projects: SCNPILOT_SOLID_1_TRIM150

Consensus taxonomy: Flavobacteriales  →  Flavobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Curated version: solids_Flavobacteriales_1

Properties

Avg. coverage: 3.98 Longest contig: 8.96 Kbp Bin length: 1.35 Mbp GC content: 39.55 %
Contigs count: 814 Features count: 1745 rRNAs count: 0 tRNAs count: 8

Genome completeness

partial RP 15 / 55 BSCG 13 / 51 ASCG 2 / 38
Displaying items 1-50 of 814 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_solids1_trim150_scaffold_2261
Order: Flavobacteriales (72.73%)
11 8957 bp 42.76 9.38 95.12
scnpilot_solids1_trim150_scaffold_7481
Order: Flavobacteriales (50%)
8 3573 bp 41.48 4.28 93.45
scnpilot_solids1_trim150_scaffold_5109
Order: Flavobacteriales (50%)
8 6134 bp 33.73 4.38 95.13
scnpilot_solids1_trim150_scaffold_3925
Species: Chryseobacterium sp. JM1 (50%)
8 5785 bp 43.84 6.92 98.17
scnpilot_solids1_trim150_scaffold_7979
Species: Elizabethkingia miricola (57.14%)
7 3407 bp 41.56 7.44 95.71
scnpilot_solids1_trim150_scaffold_3505
Species: Elizabethkingia miricola (57.14%)
7 6344 bp 40.29 6.38 97.04
scnpilot_solids1_trim150_scaffold_3804
Species: Chryseobacterium indologenes (57.14%)
7 5929 bp 38.64 5.09 92.55
scnpilot_solids1_trim150_scaffold_4510
Order: Flavobacteriales (57.14%)
7 5207 bp 35.32 4.81 86.08
scnpilot_solids1_trim150_scaffold_15130
Order: Flavobacteriales (66.67%)
6 2147 bp 37.31 3.84 93.90
scnpilot_solids1_trim150_scaffold_2996
Species: Flavobacterium beibuense (50%)
6 7218 bp 45.21 4.66 84.70
scnpilot_solids1_trim150_scaffold_4837
Species: Chryseobacterium gleum (50%)
6 4949 bp 44.94 7.91 81.83
scnpilot_solids1_trim150_scaffold_11663
Species: Chryseobacterium indologenes (66.67%)
6 2586 bp 33.91 6.90 91.65
scnpilot_solids1_trim150_scaffold_6096
Species: Flavobacterium beibuense (50%)
6 4155 bp 48.04 3.90 98.92
scnpilot_solids1_trim150_scaffold_6128
Order: Flavobacteriales (50%)
6 4141 bp 34.24 4.89 96.57
scnpilot_solids1_trim150_scaffold_5472
Species: Fluviicola taffensis (50%)
6 4512 bp 38.12 4.45 90.43
scnpilot_solids1_trim150_scaffold_10067
Species: Imtechella halotolerans (50%)
6 2875 bp 41.50 3.50 91.93
scnpilot_solids1_trim150_scaffold_20441
Order: Flavobacteriales (75%)
5 1735 bp 34.87 3.98 80.46
scnpilot_solids1_trim150_scaffold_5648
Class: Flavobacteriia (60%)
5 4408 bp 34.94 4.93 93.99
scnpilot_solids1_trim150_scaffold_7315
Genus: Flavobacterium (80%)
5 3636 bp 44.03 4.87 98.10
scnpilot_solids1_trim150_scaffold_6070
Species: Flavobacterium beibuense (80%)
5 4169 bp 43.30 9.79 99.88
scnpilot_solids1_trim150_scaffold_6862
Species: Elizabethkingia miricola (80%)
5 3824 bp 38.68 5.45 90.46
scnpilot_solids1_trim150_scaffold_11789
Order: Flavobacteriales (60%)
5 2568 bp 40.77 4.50 73.13
scnpilot_solids1_trim150_scaffold_27398
Genus: Flavobacterium (75%)
4 2382 bp 43.91 3.90 64.86
scnpilot_solids1_trim150_scaffold_7710
Species: Elizabethkingia miricola (50%)
4 3494 bp 33.57 5.71 96.68
scnpilot_solids1_trim150_scaffold_18447
Species: Galbibacter marinus (50%)
4 1861 bp 37.02 5.32 92.37
scnpilot_solids1_trim150_scaffold_7720
Class: Flavobacteriia (50%)
4 3491 bp 35.35 5.46 85.94
scnpilot_solids1_trim150_scaffold_31811
Class: Flavobacteriia (50%)
4 1262 bp 37.48 2.61 84.87
scnpilot_solids1_trim150_scaffold_7215
Genus: Chryseobacterium (75%)
4 3672 bp 38.81 4.25 96.16
scnpilot_solids1_trim150_scaffold_15663
Species: Fluviicola taffensis (66.67%)
4 2094 bp 38.87 3.01 77.60
scnpilot_solids1_trim150_scaffold_12021
Order: Flavobacteriales (50%)
4 2532 bp 38.98 4.74 76.54
scnpilot_solids1_trim150_scaffold_17001
Species: Flavobacterium sp. EM1308 (50%)
4 1974 bp 41.54 2.58 89.97
scnpilot_solids1_trim150_scaffold_41836
Species: Fluviicola taffensis (50%)
4 1032 bp 39.24 2.62 76.74
scnpilot_solids1_trim150_scaffold_12543
Species: Flavobacterium psychrophilum (50%)
4 2455 bp 37.19 3.67 79.31
scnpilot_solids1_trim150_scaffold_7746
Species: Elizabethkingia meningoseptica (50%)
4 3484 bp 43.43 5.17 82.92
scnpilot_solids1_trim150_scaffold_11908
Order: Flavobacteriales (50%)
4 2548 bp 35.24 4.77 90.42
scnpilot_solids1_trim150_scaffold_39958
Species: Fluviicola taffensis (75%)
4 1068 bp 36.52 2.81 93.82
scnpilot_solids1_trim150_scaffold_7243
Order: Flavobacteriales (50%)
4 3659 bp 39.52 4.14 83.79
scnpilot_solids1_trim150_scaffold_14178
Genus: Flavobacterium (50%)
4 2252 bp 41.07 4.13 94.58
scnpilot_solids1_trim150_scaffold_14690
Species: Fluviicola taffensis (50%)
4 2195 bp 43.10 3.14 101.00
scnpilot_solids1_trim150_scaffold_13271
Order: Flavobacteriales (50%)
4 2357 bp 32.97 3.95 81.20
scnpilot_solids1_trim150_scaffold_8672
Order: Flavobacteriales (50%)
4 3205 bp 33.98 4.73 89.67
scnpilot_solids1_trim150_scaffold_5089
Order: Flavobacteriales (50%)
4 4760 bp 37.12 4.92 91.45
scnpilot_solids1_trim150_scaffold_5348
Genus: Capnocytophaga (50%)
4 4597 bp 38.72 3.62 96.00
scnpilot_solids1_trim150_scaffold_12582
Order: Flavobacteriales (50%)
4 3256 bp 30.96 4.75 83.29
scnpilot_solids1_trim150_scaffold_41116
Class: Flavobacteriia (50%)
4 2200 bp 38.05 2.18 76.09
scnpilot_solids1_trim150_scaffold_5880
Order: Flavobacteriales (75%)
4 5462 bp 36.87 4.31 74.15
scnpilot_solids1_trim150_scaffold_10465
Genus: Chryseobacterium (50%)
4 2798 bp 37.03 4.18 95.96
scnpilot_solids1_trim150_scaffold_16651
Genus: Flavobacterium (75%)
4 2002 bp 44.76 3.67 66.83
scnpilot_solids1_trim150_scaffold_7299
Order: Flavobacteriales (50%)
4 3640 bp 46.57 4.00 90.00
scnpilot_solids1_trim150_scaffold_17846
Class: Flavobacteriia (50%)
4 1906 bp 37.46 3.15 102.47
Displaying items 1-50 of 814 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.