ggKbase | organisms

Consensus taxonomy: Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Manually curated genome
Original version: SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

Properties

Avg. coverage: 1.00 Longest contig: 8.49 Kbp Bin length: 1.84 Mbp GC content: 68.98 %

Contigs count: 1001 Features count: 2511 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 24 / 55 BSCG 24 / 51 MC: 2 ASCG 8 / 38

Displaying items 501-550 of 1001 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_19473_curated Species: Arthrobacter chlorophenolicus (50%)	2	1791 bp	69.07	1.00	99.83
scnpilot_solids1_trim150_scaffold_26215_curated Species: Microbacterium testaceum (50%)	2	1450 bp	68.48	1.00	91.45
scnpilot_solids1_trim150_scaffold_37775_curated Species: Microbacterium mangrovi (50%)	2	1110 bp	69.19	1.00	86.76
scnpilot_solids1_trim150_scaffold_35189_curated Species: Microbacterium sp. TS-1 (50%)	2	1169 bp	71.51	1.00	79.81
scnpilot_solids1_trim150_scaffold_22295_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1628 bp	69.23	1.00	96.38
scnpilot_solids1_trim150_scaffold_17988_curated Species: Microbacterium mangrovi (50%)	2	1816 bp	71.04	1.00	99.78
scnpilot_solids1_trim150_scaffold_32119_curated Species: Tetrasphaera jenkinsii (50%)	2	1250 bp	71.12	1.00	74.64
scnpilot_solids1_trim150_scaffold_8288_curated Species: Microbacterium azadirachtae (50%)	2	3311 bp	68.02	1.00	84.63
scnpilot_solids1_trim150_scaffold_37753_curated Species: Microbacterium sp. C448 (50%)	2	1111 bp	72.10	1.00	100.18
scnpilot_solids1_trim150_scaffold_15629_curated Species: Arthrobacter phenanthrenivorans (50%)	2	2091 bp	68.48	1.00	80.92
scnpilot_solids1_trim150_scaffold_22208_curated Species: Microbacterium sp. TS-1 (50%)	2	1607 bp	68.26	1.00	88.86
scnpilot_solids1_trim150_scaffold_33894_curated Species: Microbacterium mangrovi (50%)	2	1203 bp	70.49	1.00	99.75
scnpilot_solids1_trim150_scaffold_26288_curated Species: Terrabacter carboxydivorans (50%)	2	1447 bp	72.22	1.00	88.53
scnpilot_solids1_trim150_scaffold_19664_curated Species: Microbacterium foliorum (50%)	2	1777 bp	72.14	1.00	100.11
scnpilot_solids1_trim150_scaffold_10522_curated Species: Microbacterium sp. SA39 (100%)	2	2782 bp	71.71	1.00	98.02
scnpilot_solids1_trim150_scaffold_34861_curated Species: Microbacterium sp. C448 (100%)	2	1166 bp	64.41	1.00	69.98
scnpilot_solids1_trim150_scaffold_35961_curated Species: Xylanimonas cellulosilytica (50%)	2	1151 bp	67.68	1.00	93.57
scnpilot_solids1_trim150_scaffold_13488_curated Species: Brevibacterium casei (50%)	2	2258 bp	73.12	1.00	92.07
scnpilot_solids1_trim150_scaffold_20011_curated Species: Microbacterium mangrovi (100%)	2	1758 bp	71.10	1.00	99.15
scnpilot_solids1_trim150_scaffold_21825_curated Species: Microbacterium azadirachtae (50%)	2	1652 bp	65.56	1.00	53.57
scnpilot_solids1_trim150_scaffold_38959_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1086 bp	65.84	1.00	100.00
scnpilot_solids1_trim150_scaffold_39003_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1085 bp	68.85	1.00	99.54
scnpilot_solids1_trim150_scaffold_38410_curated Species: Arthrobacter phenanthrenivorans (100%)	2	828 bp	68.60	1.00	87.32
scnpilot_solids1_trim150_scaffold_25564_curated Species: Microbacterium mangrovi (50%)	2	1236 bp	70.95	1.00	100.00
scnpilot_solids1_trim150_scaffold_32680_curated Species: Microbacterium sp. SA39 (100%)	2	1194 bp	67.92	1.00	100.00
scnpilot_solids1_trim150_scaffold_5087_curated Species: Arthrobacter sp. PAMC25486 (50%)	2	4757 bp	69.69	1.00	96.05
scnpilot_solids1_trim150_scaffold_39148_curated Species: Microbacterium mangrovi (50%)	2	1082 bp	73.38	1.00	98.98
scnpilot_solids1_trim150_scaffold_18289_curated Species: Microbacterium sp. TS-1 (50%)	2	1871 bp	68.89	1.00	86.10
scnpilot_solids1_trim150_scaffold_33776_curated Species: Microbacterium sp. CH12i (100%)	2	1135 bp	67.40	1.00	91.98
scnpilot_solids1_trim150_scaffold_24149_curated Species: Tetrasphaera japonica (50%)	2	1257 bp	58.95	1.00	47.73
scnpilot_solids1_trim150_scaffold_41412_curated Species: Microbacterium sp. TS-1 (50%)	2	1580 bp	65.32	1.00	63.04
scnpilot_solids1_trim150_scaffold_34479_curated Species: Propionibacterium sp. KPL1844 (50%)	2	955 bp	73.09	1.00	100.21
scnpilot_solids1_trim150_scaffold_42240_curated Species: Arthrobacter sp. FB24 (50%)	2	963 bp	66.77	1.00	92.21
scnpilot_solids1_trim150_scaffold_42569_curated Species: Microbacterium azadirachtae (50%)	2	1016 bp	67.91	1.00	89.17
scnpilot_solids1_trim150_scaffold_40765_curated Species: Microbacterium mangrovi (50%)	2	980 bp	68.98	1.00	94.90
scnpilot_solids1_trim150_scaffold_27074_curated Species: Microbacterium oleivorans (50%)	2	1374 bp	67.90	1.00	68.78
scnpilot_solids1_trim150_scaffold_13862_curated Species: Microbacterium sp. MRS-1 (50%)	2	2283 bp	71.53	1.00	99.61
scnpilot_solids1_trim150_scaffold_19584_curated Species: Microbacterium mangrovi (50%)	2	1784 bp	72.31	1.00	100.22
scnpilot_solids1_trim150_scaffold_40258_curated Species: Microbacterium testaceum (50%)	2	1055 bp	67.39	1.00	96.68
scnpilot_solids1_trim150_scaffold_14947_curated Species: Microbacterium ginsengisoli (50%)	2	1866 bp	69.61	1.00	90.19
scnpilot_solids1_trim150_scaffold_30636_curated Species: Microbacterium sp. SA39 (100%)	2	1757 bp	69.21	1.00	103.30
scnpilot_solids1_trim150_scaffold_64738_curated Species: Microbacterium oleivorans (50%)	2	1044 bp	72.32	1.00	90.23
scnpilot_solids1_trim150_scaffold_31431_curated Species: Microbacterium ginsengisoli (50%)	2	1270 bp	70.94	1.00	95.91
scnpilot_solids1_trim150_scaffold_30038_curated Species: Arthrobacter siccitolerans (50%)	2	1313 bp	71.36	1.00	88.88
scnpilot_solids1_trim150_scaffold_29884_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1304 bp	67.56	1.00	85.58
scnpilot_solids1_trim150_scaffold_36135_curated Species: Microbacterium mangrovi (100%)	2	1724 bp	69.90	1.00	60.38
scnpilot_solids1_trim150_scaffold_13952_curated Species: Leifsonia aquatica (100%)	2	2175 bp	70.02	1.00	85.10
scnpilot_solids1_trim150_scaffold_26454_curated Species: Microbacterium mangrovi (100%)	2	1440 bp	70.49	1.00	100.00
scnpilot_solids1_trim150_scaffold_38382_curated Species: Microbacterium oxydans (50%)	2	1098 bp	71.58	1.00	96.45
scnpilot_solids1_trim150_scaffold_11256_curated Species: Microbacterium mangrovi (100%)	2	2606 bp	71.49	1.00	100.15

Displaying items 501-550 of 1001 in total

solids_Micrococcales_1

SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

solids_Micrococcales_1

SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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