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scnpilot_solids1_trim150_scaffold_447_curated

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_447_curated_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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1..300
DNA (300bp) protein (100aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YN3_SOLUE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
scnpilot_solids1_trim150_scaffold_447_curated_2
unknown

Not on your lists

comp(425..790)
DNA (366bp) protein (122aa)
hypothetical protein
scnpilot_solids1_trim150_scaffold_447_curated_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(955..1320)
DNA (366bp) protein (122aa)
Transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4C5_9GAMM
Transcriptional regulator {ECO:0000313|EMBL:EIL94316.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_447_curated_4
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1555..2241
DNA (687bp) protein (229aa)
glutathione S-transferase (EC:2.5.1.18)
Glutathione S-transferase n=1 Tax=Burkholderia cepacia GG4 RepID=J7JLS3_BURCE
Glutathione S-transferase {ECO:0000313|EMBL:KER73227.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
scnpilot_solids1_trim150_scaffold_447_curated_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2243..3004)
DNA (762bp) protein (254aa)
Putative ABC transporter inner membrane protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WD86_9GAMM
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_447_curated_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3001..3927)
DNA (927bp) protein (309aa)
ABC transporter-like protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W495_9GAMM
ABC transporter-like protein {ECO:0000313|EMBL:EIL94286.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ABC-type multidrug transport system, ATPase component
scnpilot_solids1_trim150_scaffold_447_curated_7
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4138..4350)
DNA (213bp) protein (71aa)
Transposase n=30 Tax=Bordetella RepID=F4LHT4_BORPC
Transposase {ECO:0000313|EMBL:GAN45152.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
transposase
scnpilot_solids1_trim150_scaffold_447_curated_8
unknown

Not on your lists

comp(4579..5568)
DNA (990bp) protein (330aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_447_curated_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5949..7592
DNA (1644bp) protein (548aa)
Na+ antiporter n=1 Tax=Rhodanobacter denitrificans RepID=I4WWV0_9GAMM
Na+ antiporter
Na+ antiporter {ECO:0000313|EMBL:AGG89556.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_447_curated_10
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7665..8069)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W567_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94608.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_447_curated_11
Shewanella loihica, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8183..10177)
DNA (1995bp) protein (665aa)
TonB-dependent receptor n=1 Tax=Shewanella loihica (strain ATCC BAA-1088 / PV-4) RepID=A3QI09_SHELP
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
TonB-dependent receptor {ECO:0000313|EMBL:ABO25107.1}; Flags: Precursor;; TaxID=323850 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella loihica (strain ATCC BAA-1088 / PV-4).;"
scnpilot_solids1_trim150_scaffold_447_curated_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10360..11100)
DNA (741bp) protein (247aa)
Phosphoglycerate mutase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3L5_9GAMM
Phosphoglycerate mutase {ECO:0000313|EMBL:EIL94056.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
serine/threonine-protein phosphatase PGAM5, mitochondrial-like
scnpilot_solids1_trim150_scaffold_447_curated_13
uncultured Gemmatimonadales bacterium HF0200_36I24, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(11200..12570)
DNA (1371bp) protein (457aa)
Di-and tripeptidases n=2 Tax=Bacteria RepID=E7C497_9BACT
Di-and tripeptidases {ECO:0000313|EMBL:ADI22271.1}; TaxID=723614 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; environmental samples.;" source="uncultured Gemmatimonadales bacterium HF0200_36I24.;"
putative M20 family peptidase
scnpilot_solids1_trim150_scaffold_447_curated_14
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12582..13079)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Pseudomonas fragi RepID=UPI00030E0AD3
Endoribonuclease L-PSP {ECO:0000313|EMBL:KJV29720.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
TdcF protein; K07567 TdcF protein
scnpilot_solids1_trim150_scaffold_447_curated_15
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13286..14665
DNA (1380bp) protein (460aa)
Voltage-gated chloride channel n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIM1_9GAMM
Voltage-gated chloride channel {ECO:0000313|EMBL:EIL87062.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
chloride channel protein EriC
scnpilot_solids1_trim150_scaffold_447_curated_16
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14772..16712)
DNA (1941bp) protein (647aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034D2C24
Peptidase M61 {ECO:0000313|EMBL:KGI76798.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
glycyl aminopeptidase
scnpilot_solids1_trim150_scaffold_447_curated_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16822..17757)
DNA (936bp) protein (312aa)
Tyrosine recombinase XerD n=1 Tax=Rhodanobacter denitrificans RepID=I4WZE1_9GAMM
tyrosine recombinase XerD
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_447_curated_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17783..18286
DNA (504bp) protein (168aa)
Putative membrane protein/domain protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NBE1_9GAMM
putative membrane protein/domain protein
Putative membrane protein/domain protein {ECO:0000313|EMBL:AGG87914.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_447_curated_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18471..19784
DNA (1314bp) protein (438aa)
Polyhydroxyalkanoate depolymerase, intracellular n=1 Tax=Rhodanobacter denitrificans RepID=M4NDF7_9GAMM
polyhydroxyalkanoate depolymerase, intracellular
Polyhydroxyalkanoate depolymerase, intracellular {ECO:0000313|EMBL:AGG87912.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_447_curated_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19781..20803)
DNA (1023bp) protein (341aa)
threonine aldolase (EC:4.1.2.5)
Threonine aldolase {ECO:0000313|EMBL:AGG90307.1}; EC=4.1.2.5 {ECO:0000313|EMBL:AGG90307.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Threonine aldolase n=1 Tax=Rhodanobacter denitrificans RepID=M4NJM5_9GAMM
scnpilot_solids1_trim150_scaffold_447_curated_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20847..21950)
DNA (1104bp) protein (368aa)
Putative permease n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSM3_9GAMM
Putative permease {ECO:0000313|EMBL:EIM02465.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative permease
scnpilot_solids1_trim150_scaffold_447_curated_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21947..23053)
DNA (1107bp) protein (369aa)
Putative permease n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVI7_9GAMM
Putative permease {ECO:0000313|EMBL:EIL91228.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative permease
scnpilot_solids1_trim150_scaffold_447_curated_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23277..23699
DNA (423bp) protein (141aa)
DNA polymerase III subunit chi; K02339 DNA polymerase III subunit chi [EC:2.7.7.7]
DNA polymerase III subunit chi n=1 Tax=Dyella ginsengisoli RepID=UPI00034BB89C
DNA polymerase III subunit chi {ECO:0000313|EMBL:EIL91226.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_447_curated_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23723..27247)
DNA (3525bp) protein (1175aa)
Signal transduction histidine kinase n=2 Tax=Rhodanobacter denitrificans RepID=M4NKV5_9GAMM
Signal transduction histidine kinase {ECO:0000313|EMBL:AGG90313.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
signal transduction histidine kinase
scnpilot_solids1_trim150_scaffold_447_curated_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27418..27678)
DNA (261bp) protein (87aa)
Glutaredoxin-like domain (DUF836) n=1 Tax=Rhodanobacter denitrificans RepID=M4ND81_9GAMM
Glutaredoxin-like domain (DUF836)
Glutaredoxin-like domain (DUF836) {ECO:0000313|EMBL:AGG87812.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_447_curated_26
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27868..29532
DNA (1665bp) protein (555aa)
Amino acid transporter n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VX96_9GAMM
Amino acid transporter {ECO:0000313|EMBL:EIL91837.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
amino acid transporter
scnpilot_solids1_trim150_scaffold_447_curated_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29607..30755)
DNA (1149bp) protein (383aa)
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Homoserine dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WT23_9GAMM
scnpilot_solids1_trim150_scaffold_447_curated_28
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30752..31939)
DNA (1188bp) protein (396aa)
O-succinylhomoserine (thiol)-lyase (EC:2.5.1.48)
O-succinylhomoserine (Thiol)-lyase {ECO:0000313|EMBL:AGG87801.1}; EC=2.5.1.48 {ECO:0000313|EMBL:AGG87801.1};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
O-succinylhomoserine (Thiol)-lyase n=1 Tax=Rhodanobacter denitrificans RepID=I4WT24_9GAMM
scnpilot_solids1_trim150_scaffold_447_curated_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31997..33010)
DNA (1014bp) protein (338aa)
homoserine acetyltransferase (EC:2.3.1.31)
Homoserine O-acetyltransferase {ECO:0000256|SAAS:SAAS00070949}; EC=2.3.1.- {ECO:0000256|SAAS:SAAS00276255};; EC=2.3.1.31 {ECO:0000256|SAAS:SAAS00070942};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Homoserine O-acetyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WT25_9GAMM
scnpilot_solids1_trim150_scaffold_447_curated_30
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33404..34147
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W148_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93189.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
Displaying items 1-30 of 32 in total

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