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scnpilot_solids1_trim150_scaffold_741_curated

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_741_curated_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..463
DNA (462bp) protein (154aa)
L-asparaginase/GlutRNAGln amidotransferase subunit D (EC:3.5.1.1)
Asparaginase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ13_9GAMM
Asparaginase {ECO:0000313|EMBL:EIL87204.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_741_curated_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(513..1070)
DNA (558bp) protein (186aa)
Putative FeS assembly SUF system protein SufT n=2 Tax=Rhodanobacter RepID=I4WH77_9GAMM
putative FeS assembly SUF system protein SufT
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_741_curated_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1269..1721
DNA (453bp) protein (151aa)
Uncharacterized protein n=2 Tax=Rhodanobacter RepID=I4WH76_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM00044.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_741_curated_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1762..3240)
DNA (1479bp) protein (493aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
NAD(P) transhydrogenase subunit beta n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKQ3_9GAMM
NAD/NADP transhydrogenase beta subunit
scnpilot_solids1_trim150_scaffold_741_curated_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3237..3539)
DNA (303bp) protein (101aa)
Uncharacterized protein n=2 Tax=Rhodanobacter RepID=M4NEV9_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88093.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_741_curated_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3582..4271
DNA (690bp) protein (230aa)
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:EIM02695.1}; EC=2.7.7.6 {ECO:0000313|EMBL:EIM02695.1};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
RNA polymerase factor sigma-70 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WTA3_9GAMM
RNA polymerase sigma factor, sigma-70 family
scnpilot_solids1_trim150_scaffold_741_curated_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4268..4657
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKQ6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM00048.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_741_curated_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4665..5186
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKQ7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM00049.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Protein of unknown function (DUF3106)
scnpilot_solids1_trim150_scaffold_741_curated_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5317..6417)
DNA (1101bp) protein (367aa)
NAD/NADP transhydrogenase alpha subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NBV6_9GAMM
NAD/NADP transhydrogenase alpha subunit
NAD/NADP transhydrogenase alpha subunit {ECO:0000313|EMBL:AGG88089.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_741_curated_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6598..7167
DNA (570bp) protein (190aa)
Nitroreductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUZ2_9GAMM
Nitroreductase {ECO:0000313|EMBL:EIL91033.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
nitroreductase
scnpilot_solids1_trim150_scaffold_741_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7155..8069
DNA (915bp) protein (305aa)
5'-3' exonuclease n=1 Tax=Rhodanobacter denitrificans RepID=I4WH67_9GAMM
5'-3' exonuclease (including N-terminal domain of PolI)
5'-3' exonuclease (Including N-terminal domain of PolI) {ECO:0000313|EMBL:AGG88086.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_741_curated_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8117..8713
DNA (597bp) protein (199aa)
NTP pyrophosphohydrolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0C6_9GAMM
NTP pyrophosphohydrolase {ECO:0000313|EMBL:EIL92917.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
NTP pyrophosphohydrolase
scnpilot_solids1_trim150_scaffold_741_curated_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8894..10054
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYS3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92364.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Flagellar hook-length control protein FliK
scnpilot_solids1_trim150_scaffold_741_curated_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10051..10308
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYX7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90047.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_741_curated_15
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10318..10674)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBK5_9GAMM
Protein of unknown function (DUF2802)
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_741_curated_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10757..11818)
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000379788C
flagellar motor protein
Flagellar motor protein {ECO:0000313|EMBL:AGG90050.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_741_curated_17
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11815..12555)
DNA (741bp) protein (247aa)
Flagellar motor component n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYS8_9GAMM
Flagellar motor component {ECO:0000313|EMBL:EIL92369.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
flagellar motor component
scnpilot_solids1_trim150_scaffold_741_curated_18
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12560..13921)
DNA (1362bp) protein (454aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
cheA2; chemotaxis protein chea (EC:2.7.13.3); K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
Probable chemotaxis protein chea n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UDA2_XANAP
scnpilot_solids1_trim150_scaffold_741_curated_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13931..14572)
DNA (642bp) protein (214aa)
Protein phosphatase CheZ {ECO:0000256|PIRNR:PIRNR002884}; EC=3.1.3.- {ECO:0000256|PIRNR:PIRNR002884};; Chemotaxis protein CheZ {ECO:0000256|PIRNR:PIRNR002884}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Chemotaxis protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYY3_9GAMM
chemotaxis protein
scnpilot_solids1_trim150_scaffold_741_curated_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14569..14997)
DNA (429bp) protein (143aa)
chemotaxis protein CheY n=1 Tax=Dyella japonica RepID=UPI000318A67E
Response regulator receiver protein {ECO:0000313|EMBL:EIL96764.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
scnpilot_solids1_trim150_scaffold_741_curated_21
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15032..15760)
DNA (729bp) protein (243aa)
RNA polymerase sigma factor FliA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYT2_9GAMM
RNA polymerase sigma factor FliA {ECO:0000256|HAMAP-Rule:MF_00962}; RNA polymerase sigma factor for flagellar operon {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma F {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma-28 {ECO:0000256|HAMAP-Rule:MF_00962}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG
scnpilot_solids1_trim150_scaffold_741_curated_22
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15757..16695)
DNA (939bp) protein (313aa)
Site-determining protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYT3_9GAMM
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ATPase involved in chromosome partitioning
scnpilot_solids1_trim150_scaffold_741_curated_23
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16710..18023)
DNA (1314bp) protein (438aa)
Flagellar biosynthetic protein FlhF n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBC6_9GAMM
flagellar biosynthetic protein FlhF
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_741_curated_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18129..20222)
DNA (2094bp) protein (698aa)
Flagellar biosynthesis protein FlhA n=1 Tax=Rhodanobacter denitrificans RepID=I4WYY8_9GAMM
flagellar biosynthesis protein FlhA
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:AGG90058.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_741_curated_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20235..21374)
DNA (1140bp) protein (380aa)
Flagellar biosynthetic protein FlhB n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBC8_9GAMM
Flagellar biosynthetic protein FlhB {ECO:0000313|EMBL:EIL96769.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
flagellar biosynthetic protein FlhB
scnpilot_solids1_trim150_scaffold_741_curated_26
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21378..22148)
DNA (771bp) protein (257aa)
Flagellar biosynthetic protein FliR n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBC9_9GAMM
flagellar biosynthetic protein FliR
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_741_curated_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22145..22414)
DNA (270bp) protein (90aa)
Flagellar biosynthetic protein FliQ n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYT8_9GAMM
flagellar biosynthetic protein FliQ
Flagellar biosynthetic protein FliQ {ECO:0000313|EMBL:AGG90061.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_741_curated_28
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22448..22636)
DNA (189bp) protein (63aa)
Flagellar biosynthesis protein FliP n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYC0_9GAMM
Flagellar biosynthesis protein FliP {ECO:0000313|EMBL:EIL92211.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
flagellar biosynthetic protein FliP
Displaying 28 items

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