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scnpilot_solids1_trim150_scaffold_1667_curated

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Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1667_curated_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..106)
DNA (105bp) protein (35aa)
Lipoprotein releasing system, ATP-binding protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NPA6_9GAMM
lipoprotein releasing system, ATP-binding protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1667_curated_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(99..1340)
DNA (1242bp) protein (414aa)
Lipoprotein releasing system transmembrane protein LolC/E family n=1 Tax=Rhodanobacter denitrificans RepID=I4WWG5_9GAMM
lipoprotein releasing system, transmembrane protein, LolC/E family
Lipoprotein releasing system, transmembrane protein, LolC/E family {ECO:0000313|EMBL:AGG89467.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1667_curated_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1438..1875)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWG6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89468.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1667_curated_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1847..2095)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWG7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89469.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1667_curated_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2199..2981)
DNA (783bp) protein (261aa)
succinate dehydrogenase subunit B (EC:1.3.5.1)
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Succinate dehydrogenase iron-sulfur subunit n=1 Tax=Rhodanobacter denitrificans RepID=I4WWG8_9GAMM
scnpilot_solids1_trim150_scaffold_1667_curated_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3072..4859)
DNA (1788bp) protein (596aa)
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
succinate dehydrogenase, flavoprotein subunit (EC:1.3.5.1)
Succinate dehydrogenase flavoprotein subunit n=1 Tax=Rhodanobacter denitrificans RepID=I4WWG9_9GAMM
scnpilot_solids1_trim150_scaffold_1667_curated_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4864..5277)
DNA (414bp) protein (138aa)
succinate dehydrogenase subunit D (EC:1.3.5.1)
Succinate dehydrogenase subunit D {ECO:0000313|EMBL:AGG89472.1}; EC=1.3.5.1 {ECO:0000313|EMBL:AGG89472.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Succinate dehydrogenase membrane anchor subunit n=1 Tax=Rhodanobacter denitrificans RepID=I4WWH0_9GAMM
scnpilot_solids1_trim150_scaffold_1667_curated_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5274..5669)
DNA (396bp) protein (132aa)
succinate dehydrogenase subunit C (EC:1.3.5.1)
Succinate dehydrogenase subunit C {ECO:0000313|EMBL:AGG89473.1}; EC=1.3.5.1 {ECO:0000313|EMBL:AGG89473.1};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Succinate dehydrogenase membrane anchor subunit n=1 Tax=Rhodanobacter denitrificans RepID=I4WWH1_9GAMM
scnpilot_solids1_trim150_scaffold_1667_curated_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6056..6859
DNA (804bp) protein (268aa)
Folate-binding protein YgfZ n=1 Tax=Rhodanobacter denitrificans RepID=I4WWH3_9GAMM
folate-binding protein YgfZ
Folate-binding protein YgfZ {ECO:0000313|EMBL:AGG89475.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1667_curated_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7334..7768
DNA (435bp) protein (145aa)
Cell Wall Hydrolase n=2 Tax=Rhodanobacter denitrificans RepID=M4NPB3_9GAMM
Cell Wall Hydrolase
Cell Wall Hydrolase {ECO:0000313|EMBL:AGG89476.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1667_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7851..8348)
DNA (498bp) protein (166aa)
Outer membrane lipoprotein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWH5_9GAMM
outer membrane lipoprotein
Outer membrane lipoprotein {ECO:0000313|EMBL:AGG89477.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1667_curated_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8377..8958)
DNA (582bp) protein (194aa)
Putative outer membrane lipoprotein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWH6_9GAMM
putative outer membrane lipoprotein
Putative outer membrane lipoprotein {ECO:0000313|EMBL:AGG89478.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1667_curated_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9116..9901
DNA (786bp) protein (262aa)
Hydrolase, TatD family n=1 Tax=Rhodanobacter denitrificans RepID=M4NF95_9GAMM
hydrolase, TatD family
Hydrolase, TatD family {ECO:0000313|EMBL:AGG89479.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1667_curated_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9982..10506
DNA (525bp) protein (175aa)
MarR family transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WWH9_9GAMM
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGG89480.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1667_curated_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10518..11999
DNA (1482bp) protein (494aa)
NodT family RND efflux system outer membrane lipoprotein n=2 Tax=Rhodanobacter denitrificans RepID=I4WWI0_9GAMM
efflux transporter, outer membrane factor lipoprotein, NodT family
Efflux transporter, outer membrane factor lipoprotein, NodT family {ECO:0000313|EMBL:AGG89481.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1667_curated_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11986..13188
DNA (1203bp) protein (401aa)
Efflux pump membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWI1_9GAMM
multidrug resistance efflux pump
Multidrug resistance efflux pump {ECO:0000313|EMBL:AGG89482.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1667_curated_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13200..14762
DNA (1563bp) protein (521aa)
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Rhodanobacter denitrificans RepID=I4WWI2_9GAMM
drug resistance transporter, EmrB/QacA subfamily
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:AGG89483.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1667_curated_18
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14856..15353
DNA (498bp) protein (166aa)
Polyhydroxyalkanoate synthesis repressor PhaR n=1 Tax=Rhodanobacter denitrificans RepID=I4WWI3_9GAMM
polyhydroxyalkanoate synthesis repressor PhaR
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1667_curated_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15468..16229
DNA (762bp) protein (254aa)
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:AGG89485.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AGG89485.1};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WWI4_9GAMM
scnpilot_solids1_trim150_scaffold_1667_curated_20
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16293..17498)
DNA (1206bp) protein (402aa)
General secretion pathway protein F n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMQ1_9GAMM
General secretion pathway protein F {ECO:0000313|EMBL:EIL88492.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
general secretion pathway protein F; K02455 general secretion pathway protein F
scnpilot_solids1_trim150_scaffold_1667_curated_21
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17503..18978)
DNA (1476bp) protein (492aa)
Type II secretion system protein E n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMQ2_9GAMM
Type II secretion system protein E {ECO:0000313|EMBL:EIL88493.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
type II secretion system protein E; K02454 general secretion pathway protein E
scnpilot_solids1_trim150_scaffold_1667_curated_22
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18986..21094)
DNA (2109bp) protein (703aa)
Type II and III secretion system protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMQ3_9GAMM
Type II and III secretion system protein {ECO:0000313|EMBL:EIL88494.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
type II and III secretion system protein; K02453 general secretion pathway protein D
scnpilot_solids1_trim150_scaffold_1667_curated_23
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21130..21600)
DNA (471bp) protein (157aa)
Putative general secretion pathway related transmembrane protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMQ4_9GAMM
Putative general secretion pathway related transmembrane protein {ECO:0000313|EMBL:EIL88495.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative general secretion pathway related transmembrane protein; K02452 general secretion pathway protein C
scnpilot_solids1_trim150_scaffold_1667_curated_24
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21669..22475)
DNA (807bp) protein (269aa)
General secretory pathway protein N n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMQ5_9GAMM
General secretory pathway protein N {ECO:0000313|EMBL:EIL88496.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
gspN; general secretory pathway protein N; K02463 general secretion pathway protein N
scnpilot_solids1_trim150_scaffold_1667_curated_25
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22472..22906)
DNA (435bp) protein (145aa)
General secretion pathway M protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMQ6_9GAMM
General secretion pathway M protein {ECO:0000313|EMBL:EIL88497.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
general secretion pathway M protein; K02462 general secretion pathway protein M
scnpilot_solids1_trim150_scaffold_1667_curated_26
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22957..24168)
DNA (1212bp) protein (404aa)
Type II secretion system protein L n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMQ7_9GAMM
General secretion pathway L {ECO:0000313|EMBL:EIL88498.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
general secretion pathway L; K02461 general secretion pathway protein L
scnpilot_solids1_trim150_scaffold_1667_curated_27
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24165..25085)
DNA (921bp) protein (307aa)
Type II secretion system protein K n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMQ8_9GAMM
Type II secretion system protein K {ECO:0000256|PIRNR:PIRNR002786}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
general secretion pathway protein K; K02460 general secretion pathway protein K
scnpilot_solids1_trim150_scaffold_1667_curated_28
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25082..25681)
DNA (600bp) protein (200aa)
General secretion pathway protein J n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMQ9_9GAMM
General secretion pathway protein J {ECO:0000313|EMBL:EIL88500.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
general secretion pathway protein J; K02459 general secretion pathway protein J
scnpilot_solids1_trim150_scaffold_1667_curated_29
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25678..26073)
DNA (396bp) protein (132aa)
General secretion pathway protein I n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMR0_9GAMM
General secretion pathway protein I {ECO:0000313|EMBL:EIL88501.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
general secretion pathway protein I; K02458 general secretion pathway protein I
scnpilot_solids1_trim150_scaffold_1667_curated_30
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26051..26572)
DNA (522bp) protein (174aa)
General secretion pathway protein H n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMR1_9GAMM
General secretion pathway protein H {ECO:0000313|EMBL:EIL88502.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
general secretion pathway protein H; K02457 general secretion pathway protein H
Displaying items 1-30 of 34 in total

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