ggKbase home page

scnpilot_solids1_trim150_scaffold_120_curated

Search features with annotation key words

Displaying items 31-60 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_120_curated_31
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

34506..37013
DNA (2508bp) protein (836aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; K01775 alanine racemase [EC:5.1.1.1]
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000313|EMBL:AEW01863.1}; EC=6.3.2.10 {ECO:0000313|EMBL:AEW01863.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJW5_NIAKG
scnpilot_solids1_trim150_scaffold_120_curated_32
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

37173..37853
DNA (681bp) protein (227aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112508};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
signal peptidase II; K03101 signal peptidase II [EC:3.4.23.36]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000379BCD2
scnpilot_solids1_trim150_scaffold_120_curated_33
Flavobacterium hydatis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

37886..39601
DNA (1716bp) protein (572aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036DAD90
Uncharacterized protein {ECO:0000313|EMBL:KFF09624.1}; TaxID=991 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hydatis (Cytophaga aquatilis).;"
scnpilot_solids1_trim150_scaffold_120_curated_34
Zobellia galactanivorans, Zobellia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

39930..41927
DNA (1998bp) protein (666aa)
TonB-dependent Receptor n=1 Tax=Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871 / Dsij) RepID=G0L7F8_ZOBGA
TonB-dependent Receptor; K02014 iron complex outermembrane recepter protein
TonB-dependent Receptor {ECO:0000313|EMBL:CAZ97390.1}; TaxID=63186 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zobellia.;" source="Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871; / Dsij).;"
scnpilot_solids1_trim150_scaffold_120_curated_35
Zobellia galactanivorans, Zobellia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

41927..42556
DNA (630bp) protein (210aa)
Nicotinamide mononucleotide transporter n=1 Tax=Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871 / Dsij) RepID=G0L0G5_ZOBGA
pnuC2; Nicotinamide mononucleotide transporter; K03811 nicotinamide mononucleotide transporter
Nicotinamide mononucleotide transporter {ECO:0000313|EMBL:CAZ97389.1}; TaxID=63186 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zobellia.;" source="Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871; / Dsij).;"
scnpilot_solids1_trim150_scaffold_120_curated_36
Zobellia galactanivorans, Zobellia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

42549..43544
DNA (996bp) protein (332aa)
nadR; Nicotinamide-nucleotide adenylyltransferase / ribosylnicotinamide kinase (EC:2.7.7.1); K06211 HipB family transcriptional regulator, involved in the regulation of NAD biosynthesis
Nicotinamide-nucleotide adenylyltransferase / Ribosylnicotinamide kinase {ECO:0000313|EMBL:CAZ97388.1}; EC=2.7.7.1 {ECO:0000313|EMBL:CAZ97388.1};; TaxID=63186 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zobellia.;" source="Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871; / Dsij).;"
Nicotinamide-nucleotide adenylyltransferase / Ribosylnicotinamide kinase n=1 Tax=Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871 / Dsij) RepID=G0L7F7_ZOBGA
scnpilot_solids1_trim150_scaffold_120_curated_37
unknown

Not on your lists

43899..44192
DNA (294bp) protein (98aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_120_curated_38
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

44321..45187
DNA (867bp) protein (289aa)
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|SAAS:SAAS00078538};; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
2-dehydro-3-deoxyphosphooctonate aldolase; K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037443A4
scnpilot_solids1_trim150_scaffold_120_curated_39
Cellulophaga lytica, Cellulophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(45210..46547)
DNA (1338bp) protein (446aa)
hypothetical protein n=1 Tax=Flavobacterium sp. ACAM 123 RepID=UPI000313EBBB
OmpA/MotB domain-containing protein
OmpA/MotB domain protein {ECO:0000313|EMBL:ADY29071.1}; TaxID=867900 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Cellulophaga.;" source="Cellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC; 14961 / NCIMB 1423 / VKM B-1433 / Cy l20).;"
scnpilot_solids1_trim150_scaffold_120_curated_40
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(46633..47064)
DNA (432bp) protein (144aa)
Rare lipoprotein A n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJL1_NIAKG
rare lipoprotein A; K03642 rare lipoprotein A
Rare lipoprotein A {ECO:0000313|EMBL:AEW00758.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_120_curated_41
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(47406..47894)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJP8_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW00795.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_120_curated_42
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(48040..48702)
DNA (663bp) protein (221aa)
Outer membrane lipoprotein carrier protein LolA n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJQ0_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC89318.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
outer membrane lipoprotein carrier protein LolA
scnpilot_solids1_trim150_scaffold_120_curated_43
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(48838..50487)
DNA (1650bp) protein (550aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
CTP synthase; K01937 CTP synthase [EC:6.3.4.2]
CTP synthetase n=1 Tax=Segetibacter koreensis RepID=UPI00036F7E36
scnpilot_solids1_trim150_scaffold_120_curated_44
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(50769..52967)
DNA (2199bp) protein (733aa)
Phosphoribosylformylglycinamidine synthase subunit PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00420};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00420};; Formylglycinamide ribonucleotide amidotransferase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; Glutamine amidotransferase PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Phosphoribosylformylglycinamidine synthase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; S
phosphoribosylformylglycinamidine synthase subunit II; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
phosphoribosylglycinamide synthetase n=1 Tax=Niabella aurantiaca RepID=UPI00036BF728
scnpilot_solids1_trim150_scaffold_120_curated_45
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

53066..54322
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035D8EEB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW00973.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_120_curated_46
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

54435..56627
DNA (2193bp) protein (731aa)
glutamate--ammonia ligase; K01915 glutamine synthetase [EC:6.3.1.2]
Glutamate--ammonia ligase {ECO:0000313|EMBL:AEW00974.1}; EC=6.3.1.2 {ECO:0000313|EMBL:AEW00974.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Glutamate--ammonia ligase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNP8_NIAKG
scnpilot_solids1_trim150_scaffold_120_curated_47
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

56726..57166
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NSN3_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17829.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_120_curated_48
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(57242..59863)
DNA (2622bp) protein (874aa)
molecular chaperone ClpB n=1 Tax=Segetibacter koreensis RepID=UPI00035EE016
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
ATP-dependent chaperone ClpB; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB
scnpilot_solids1_trim150_scaffold_120_curated_49
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

60038..60964
DNA (927bp) protein (309aa)
epoxyqueuosine reductase n=1 Tax=Segetibacter koreensis RepID=UPI00037804C9
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids1_trim150_scaffold_120_curated_50
unknown

Not on your lists

comp(61026..61592)
DNA (567bp) protein (189aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_120_curated_51
Algibacter lectus, Algibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(61602..62129)
DNA (528bp) protein (176aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8X145_9PORP
Uncharacterized protein {ECO:0000313|EMBL:GAL77260.1}; TaxID=221126 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Algibacter.;" source="Algibacter lectus.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_120_curated_52
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(62198..63523)
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFD0_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV97340.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_120_curated_53
Bacteroides pyogenes, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(63536..64111)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Bacteroides pyogenes F0041 RepID=U2DKA6_9BACE
Uncharacterized protein {ECO:0000313|EMBL:GAE19015.1}; TaxID=1121100 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides pyogenes DSM 20611 = JCM 6294.;"
scnpilot_solids1_trim150_scaffold_120_curated_54
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(64226..65629)
DNA (1404bp) protein (468aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFC9_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC93083.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_120_curated_55
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(65616..66185)
DNA (570bp) protein (190aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFC8_NIAKG
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEV97338.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_120_curated_56
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(66295..66888)
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035D417D
Uncharacterized protein {ECO:0000313|EMBL:KIF32405.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
scnpilot_solids1_trim150_scaffold_120_curated_57
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(66909..67706)
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003628EBA
Uncharacterized protein {ECO:0000313|EMBL:KIF32020.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
scnpilot_solids1_trim150_scaffold_120_curated_58
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

67919..69205
DNA (1287bp) protein (429aa)
adenosylmethionine-8-amino-7-oxononanoate aminotransferase; K00833 adenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000313|EMBL:AEV97337.1}; EC=2.6.1.62 {ECO:0000313|EMBL:AEV97337.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFC7_NIAKG
scnpilot_solids1_trim150_scaffold_120_curated_59
unknown

Not on your lists

comp(69217..69729)
DNA (513bp) protein (171aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_120_curated_60
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(69740..70825)
DNA (1086bp) protein (362aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000377000F
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
ABC transporter; K09686 antibiotic transport system permease protein
Displaying items 31-60 of 71 in total

View Taxonomy