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scnpilot_solids1_trim150_scaffold_120_curated_55

Organism: solids_Sphingobacteriales_4

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 ASCG 12 / 38
Location: comp(65616..66185)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFC8_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 69.9
  • Coverage: 183.0
  • Bit_score: 265
  • Evalue 3.10e-68
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 69.9
  • Coverage: 183.0
  • Bit_score: 265
  • Evalue 9.70e-69
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEV97338.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 69.9
  • Coverage: 183.0
  • Bit_score: 265
  • Evalue 4.30e-68

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Taxonomy

Niastella koreensis → Niastella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 570
ATGCGCCAGTTGGATTATCATCAATTAGTAAAAGACTGCCTGAAATTAAAACCGGAGGCTCAAAGAATGTTGTATGAACATTTTGCGCCTGCGATGCTTGGCGTGTGTTTCAGATATACTAAAAGTATAAATGATGCCGAAGAAGTATTGCAGGAAGGTTTTATAAAGGTTTTTATGCGGTTAGGACAATTTAAAGATGAGGGGGAATTAGGAGCCTGGATCAGGAAGATCATGACAAACACTGCATTAAATTATTTGAAAACCAATCAAAAATATCGCTATGATCTCTTGTTTGATGAAATGCCTTTACATCCTGTCTCTACAGAAAATCCGGCAGTGAATCTTCAGGCAAAAGAGTTATCGGAATTAATAAGGCAATTGCCTACCGGATTTCAAACCATATTTAATCTTCATGCAGTGGAAGGTTATAAGCATACAGAAATAGCGTCAATGCTGGGTATCAGCGAAGGAACTTCAAGATCGCAATATGCAAGGGCAAGGATTCTGTTAATTGAATGGATTGAAAAATTTTCATTAAAAAAGCAAAGTGGCCATTATGGAACCAAATAA
PROTEIN sequence
Length: 190
MRQLDYHQLVKDCLKLKPEAQRMLYEHFAPAMLGVCFRYTKSINDAEEVLQEGFIKVFMRLGQFKDEGELGAWIRKIMTNTALNYLKTNQKYRYDLLFDEMPLHPVSTENPAVNLQAKELSELIRQLPTGFQTIFNLHAVEGYKHTEIASMLGISEGTSRSQYARARILLIEWIEKFSLKKQSGHYGTK*