ggKbase home page

scnpilot_solids1_trim150_scaffold_779_curated_13

Organism: solids_Sphingobacteriales_4

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 ASCG 12 / 38
Location: 11282..11878

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PTL4_CHIPD similarity UNIREF
DB: UNIREF100
  • Identity: 39.0
  • Coverage: 187.0
  • Bit_score: 136
  • Evalue 2.30e-29
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 39.0
  • Coverage: 187.0
  • Bit_score: 136
  • Evalue 7.10e-30
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACU62771.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 39.0
  • Coverage: 187.0
  • Bit_score: 136
  • Evalue 3.20e-29

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Chitinophaga pinensis → Chitinophaga → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 597
ATGCTGACTGTTACCAAATATGATGAGAAAGCTTTGCTTGCTTTAGTTGCGAAAGGCGACAGGCAGGCATTTAAACAACTTTATACCTCCCATCTGAATAATTTATATCGTTCTGTCTTCCTGTTTACCAAATCCAAAGAAGAAACAGAAGAGATCCTTCAGGAAATATTTATCAAGATATGGGAGAACCGGGAAAAACTTTCTGAAGTTGATTCTTTAAAAAACTATTTATTCCGTTTCGCAAAGAACAAATTACTTGATAATATCCGTCATTTGCAGGTCAGGCAACGGGCGCTTTCAGAAATCAGAAGAACAAAGGATATTTCTGAAAACACGACCCGGGACCAATGCACCTATAAAGAATATTATTACCTTGTTCAGCAGGCTATTGAAAAATTACCTCCCAAACGCAAACTTATTTTCCGGCTTAATATCGAAAATGGGCTTTCCCAGGATGAAATTGCCGGTCAATTAAATATCTCCAAATCAGTTGTACAAAAACAGATTTATAAAGCATCTTACTTTGTGCGGGAATATCTTCTCGAACATGGAGAACTTACTTTTTGTCTCATGGCTTTCCTTTTATTAGTTTTTTAG
PROTEIN sequence
Length: 199
MLTVTKYDEKALLALVAKGDRQAFKQLYTSHLNNLYRSVFLFTKSKEETEEILQEIFIKIWENREKLSEVDSLKNYLFRFAKNKLLDNIRHLQVRQRALSEIRRTKDISENTTRDQCTYKEYYYLVQQAIEKLPPKRKLIFRLNIENGLSQDEIAGQLNISKSVVQKQIYKASYFVREYLLEHGELTFCLMAFLLLVF*