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scnpilot_solids1_trim150_scaffold_19_curated_25

Organism: solids_Sphingobacteriales_4

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 ASCG 12 / 38
Location: 32586..33155

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y2W3_PEDHD similarity UNIREF
DB: UNIREF100
  • Identity: 44.0
  • Coverage: 175.0
  • Bit_score: 147
  • Evalue 1.60e-32
RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 44.0
  • Coverage: 175.0
  • Bit_score: 147
  • Evalue 5.00e-33
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:ACU03176.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 44.0
  • Coverage: 175.0
  • Bit_score: 147
  • Evalue 2.20e-32

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Taxonomy

Pedobacter heparinus → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 570
ATGAATAATTTTCTTATCAATACATTACAGAGCTATAGCGACCAAACACTTATTGGCTTGTGGCAACAGGGTAATGAACTGGCCTTTGATATATTATATAAAAGATACGTAATTCAGTTAGTAGGATTAATCACACAAAAAACCGATTCGGAAGAAAATGCAAAGGAACTTTCCCAAGAAGTTTTTCTTGCGGTGTACCTGAAAAAAGATAATCTTCAAGAAATTCAAAATTTTAAGGCGTACTTGTTTGGCATTGCAAAAAATAAACTATTCAATTATTACCGGCATCAGTTAGTAGAGCAGAAATACCGGCAAGATTTATTGAATAGAGTTGAACCCACTATAGATGATGTAAAAGAGATACTTGAAAATAAACAACTTCAGCAAATAATTGACCAGCAAGTGGAGCAACTGCCTCCTAAATGCCGTGAAGTGTTCAAACTCAGCCGGCAGGAAAATTTATCGTATAAGGCTATAGCTGAACGATTAAAAATATCCGAAAATACCGTTGATCAGCATATTCAGAAAGCGCTTCGTGCCATACGTTCAGCTATTAGAGATTATGGGTAA
PROTEIN sequence
Length: 190
MNNFLINTLQSYSDQTLIGLWQQGNELAFDILYKRYVIQLVGLITQKTDSEENAKELSQEVFLAVYLKKDNLQEIQNFKAYLFGIAKNKLFNYYRHQLVEQKYRQDLLNRVEPTIDDVKEILENKQLQQIIDQQVEQLPPKCREVFKLSRQENLSYKAIAERLKISENTVDQHIQKALRAIRSAIRDYG*