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scnpilot_solids1_trim150_scaffold_19_curated_122

Organism: solids_Sphingobacteriales_4

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 ASCG 12 / 38
Location: 132533..133072

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, expansion family 1 n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G3C5_ECHVK similarity UNIREF
DB: UNIREF100
  • Identity: 33.3
  • Coverage: 174.0
  • Bit_score: 113
  • Evalue 1.90e-22
RNA polymerase sigma-70 factor, expansion family 1 similarity KEGG
DB: KEGG
  • Identity: 33.3
  • Coverage: 174.0
  • Bit_score: 113
  • Evalue 5.80e-23
RNA polymerase sigma-70 factor, expansion family 1 {ECO:0000313|EMBL:AGA80739.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 33.3
  • Coverage: 174.0
  • Bit_score: 113
  • Evalue 2.60e-22

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Taxonomy

Echinicola vietnamensis → Echinicola → Cytophagales → Cytophagia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 540
TTGCAACCAACAGATGAAATAGAACTGCTTAACCGTCTTTCAAAAAGTGAAAAAAAAGCTTTCCGGATTATTTATGAGCGCTACTGGGAGCGCTTATATCACCTGTGTTTTTATTATATCGCCTCGCGGGAAGAAGCCGAGGACCTCGTGATGAATGTCTTTATGTCGCTGTGGAAGAATCGTTCAAAAATACAAATAGACCACCTGGAACATTACCTGGTAAAAGCCGCCAAGAATCAATCGCTTAAATTTATTCTTAAACAGCAAAAGCAACGAAAGCAATTTCATCAGCTAAAGGAAAGAAAAACACTTTTGCCAGACCTGAGCTATTCGCCCCAGCAGCTATTAGAGGCCAAAGAACTTTCTTCCCGTATTTATGACAACCTCCAGGAACTTTCACCCAGGACCCAGCAGATTTTTTTATTGAACCGTGAGAAAGGATTTACATACGAACAGATAGCCGGCTTTTTGGGTATATCCGTTAAGACCGTTGAATACCATATTTCAAAAGCAATACATACTTTAACCAGTATATCCTGA
PROTEIN sequence
Length: 180
LQPTDEIELLNRLSKSEKKAFRIIYERYWERLYHLCFYYIASREEAEDLVMNVFMSLWKNRSKIQIDHLEHYLVKAAKNQSLKFILKQQKQRKQFHQLKERKTLLPDLSYSPQQLLEAKELSSRIYDNLQELSPRTQQIFLLNREKGFTYEQIAGFLGISVKTVEYHISKAIHTLTSIS*