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scnpilot_solids1_trim150_scaffold_4800_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_4800_curated_1
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..112)
DNA (111bp) protein (37aa)
adenylosuccinate synthetase; K01939 adenylosuccinate synthase [EC:6.3.4.4]
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
Adenylosuccinate synthetase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=PURA_SPHAL
scnpilot_solids1_trim150_scaffold_4800_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(360..1475)
DNA (1116bp) protein (372aa)
tRNA synthetase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQ29_9SPHN
tRNA synthetase {ECO:0000313|EMBL:ENY80459.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
tRNA synthetase; K02502 ATP phosphoribosyltransferase regulatory subunit
scnpilot_solids1_trim150_scaffold_4800_curated_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1623..3209)
DNA (1587bp) protein (529aa)
D-3-phosphoglycerate dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
D-3-phosphoglycerate dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPS8_9SPHN
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:ENY80460.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
scnpilot_solids1_trim150_scaffold_4800_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3331..4458)
DNA (1128bp) protein (376aa)
Phosphoserine transaminase {ECO:0000256|SAAS:SAAS00182444}; EC=2.6.1.52 {ECO:0000256|SAAS:SAAS00182444};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
phosphoserine aminotransferase; K00831 phosphoserine aminotransferase [EC:2.6.1.52]
Phosphoserine aminotransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAH5_9SPHN
scnpilot_solids1_trim150_scaffold_4800_curated_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5208..5372
DNA (165bp) protein (55aa)
Extensin-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VYY2_9SPHN
Extensin-like protein {ECO:0000313|EMBL:ENY80462.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
extensin-like protein
scnpilot_solids1_trim150_scaffold_4800_curated_6
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5410..6282
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GVI2_SPHAL
hypothetical protein; K06966
Uncharacterized protein {ECO:0000313|EMBL:ABF52340.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
scnpilot_solids1_trim150_scaffold_4800_curated_7
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6352..6801)
DNA (450bp) protein (150aa)
Cytochrome c, class I n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GVI1_SPHAL
cytochrome c, class I; K08738 cytochrome c
Cytochrome c, class I {ECO:0000313|EMBL:ABF52341.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
scnpilot_solids1_trim150_scaffold_4800_curated_8
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6801..7451)
DNA (651bp) protein (217aa)
Cytochrome c, class I n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GVI0_SPHAL
Cytochrome c, class I {ECO:0000313|EMBL:KGB55128.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
cytochrome c, class I; K08738 cytochrome c
scnpilot_solids1_trim150_scaffold_4800_curated_9
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7620..8510
DNA (891bp) protein (297aa)
prephenate dehydratase; K04518 prephenate dehydratase [EC:4.2.1.51]
Prephenate dehydratase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GVH9_SPHAL
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
scnpilot_solids1_trim150_scaffold_4800_curated_10
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8535..9212)
DNA (678bp) protein (226aa)
CDP-alcohol phosphatidyltransferase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GVH8_SPHAL
CDP-alcohol phosphatidyltransferase
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
scnpilot_solids1_trim150_scaffold_4800_curated_11
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9308..9724)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GVH7_SPHAL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF52345.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
Displaying 11 items

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