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scnpilot_solids1_trim150_scaffold_1155_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1155_curated_1
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..1467
DNA (1467bp) protein (489aa)
NODE_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ97512.1}; EC=3.5.1.81 {ECO:0000313|EMBL:KIQ97512.1};; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
N-acyl-D-amino-acid deacylase (EC:3.5.1.81)
D-aminoacylase n=1 Tax=alpha proteobacterium JLT2015 RepID=M2TPT8_9PROT
scnpilot_solids1_trim150_scaffold_1155_curated_2
unknown

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comp(1540..1674)
DNA (135bp) protein (45aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1155_curated_3

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comp(1871..2473)
DNA (603bp) protein (201aa)
solI; Autoinducer synthesis protein solI (EC:2.3.1.184)
Autoinducer synthesis protein solI n=1 Tax=mine drainage metagenome RepID=E6QVK5_9ZZZZ
Autoinducer synthesis protein solI {ECO:0000313|EMBL:CBI11278.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
scnpilot_solids1_trim150_scaffold_1155_curated_4
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2636..3007)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CSX8_THIA3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ88397.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
scnpilot_solids1_trim150_scaffold_1155_curated_5

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3156..3875
DNA (720bp) protein (240aa)
Putative autoinducer-binding transcriptional regulator LuxR family n=1 Tax=mine drainage metagenome RepID=E6QPQ1_9ZZZZ
Putative autoinducer-binding transcriptional regulator LuxR family {ECO:0000313|EMBL:CBI09222.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
AfeR; autoinducer-binding transcriptional regulator LuxR family
scnpilot_solids1_trim150_scaffold_1155_curated_6
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3975..6266)
DNA (2292bp) protein (764aa)
Malic enzyme {ECO:0000313|EMBL:AHY57778.1}; EC=1.1.1.40 {ECO:0000313|EMBL:AHY57778.1};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
NAD-binding malic protein; K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
malic enzyme n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E46FC6
scnpilot_solids1_trim150_scaffold_1155_curated_7
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6475..7740
DNA (1266bp) protein (422aa)
amino acid aldolase or racemase; K01753 D-serine dehydratase [EC:4.3.1.18]
D-serine deaminase 1 n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7T2T9_ALCXX
Amino acid deaminase {ECO:0000313|EMBL:AKC86992.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
scnpilot_solids1_trim150_scaffold_1155_curated_8
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7762..9117
DNA (1356bp) protein (452aa)
2-keto-3-deoxygluconate permease n=1 Tax=Pseudomonas luteola RepID=UPI0002F60634
Permease DsdX {ECO:0000313|EMBL:AKC86991.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
gluconate transporter
scnpilot_solids1_trim150_scaffold_1155_curated_9
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9133..9996
DNA (864bp) protein (288aa)
RpiR family transcriptional regulator n=1 Tax=Pseudomonas sp. 45MFCol3.1 RepID=UPI0003783279
RpiR family transcriptional regulator {ECO:0000313|EMBL:AKC86990.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
helix-turn-helix protein RpiR:sugar isomerase (SIS)
scnpilot_solids1_trim150_scaffold_1155_curated_10
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10000..11424
DNA (1425bp) protein (475aa)
dan; D-aminoacylase Dan (EC:3.5.1.81)
Amidohydrolase n=1 Tax=Pseudomonas psychrotolerans L19 RepID=H0JGS0_9PSED
D-aminoacylase {ECO:0000313|EMBL:AKC88328.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
scnpilot_solids1_trim150_scaffold_1155_curated_11
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11509..11904
DNA (396bp) protein (132aa)
Endoribonuclease L-PSP n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46U09_CUPPJ
Endoribonuclease L-PSP {ECO:0000313|EMBL:AKC86989.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
endoribonuclease L-PSP
scnpilot_solids1_trim150_scaffold_1155_curated_12
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12360..13571
DNA (1212bp) protein (404aa)
Sodium/glutamate symporter n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W596_9GAMM
NODE_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ97513.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
gltS; sodium/glutamate symport carrier protein; K03312 glutamate:Na+ symporter, ESS family
scnpilot_solids1_trim150_scaffold_1155_curated_13
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13641..15374)
DNA (1734bp) protein (578aa)
NODE_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ97514.1}; EC=2.3.2.2 {ECO:0000313|EMBL:KIQ97514.1};; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
gamma-glutamyltranspeptidase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
Gamma-glutamyltranspeptidase n=1 Tax=Caulobacter crescentus (strain NA1000 / CB15N) RepID=B8H2U6_CAUCN
scnpilot_solids1_trim150_scaffold_1155_curated_14
unknown

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comp(15502..15657)
DNA (156bp) protein (52aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1155_curated_15
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15825..16178)
DNA (354bp) protein (118aa)
polyprenyl synthetase; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90]
octaprenyl-diphosphate synthase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B494BD
Octaprenyl-diphosphate synthase {ECO:0000313|EMBL:KGM54486.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
Displaying 15 items

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