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scnpilot_solids1_trim150_scaffold_900_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_900_curated_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..843)
DNA (843bp) protein (281aa)
Putative deacylase n=1 Tax=Rhodanobacter denitrificans RepID=M4NAN7_9GAMM
putative deacylase
Putative deacylase {ECO:0000313|EMBL:AGG87615.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_900_curated_2
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(925..1812)
DNA (888bp) protein (296aa)
Phospholipid/glycerol acyltransferase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WT39_PSEUU
Acyltransferase {ECO:0000313|EMBL:AKC87954.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
phospholipid/glycerol acyltransferase
scnpilot_solids1_trim150_scaffold_900_curated_3
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1997..2584
DNA (588bp) protein (196aa)
Ribonuclease T {ECO:0000256|HAMAP-Rule:MF_00157, ECO:0000256|SAAS:SAAS00051933}; EC=3.1.13.- {ECO:0000256|HAMAP-Rule:MF_00157, ECO:0000256|SAAS:SAAS00051955};; Exoribonuclease T {ECO:0000256|HAMAP-Rule:MF_00157}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
ribonuclease T; K03683 ribonuclease T [EC:3.1.13.-]
ribonuclease T n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002E2F82C
scnpilot_solids1_trim150_scaffold_900_curated_4
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2624..5686)
DNA (3063bp) protein (1021aa)
histidine kinase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031EF477
Histidine kinase {ECO:0000313|EMBL:AHY59653.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
putative two-component system sensor kinase/response regulator fusion protein with GGDEF signalling domain
scnpilot_solids1_trim150_scaffold_900_curated_5
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5791..7194)
DNA (1404bp) protein (468aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
histidine kinase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030AA6CB
putative two-component system, sensor histidine kinase transcriptional regulator
scnpilot_solids1_trim150_scaffold_900_curated_6
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7191..7892)
DNA (702bp) protein (234aa)
transcriptional regulator n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E57A31
Stenotrophomonas maltophilia strain ZBG7B contig_59, whole genome shotgun sequence {ECO:0000313|EMBL:KIP83701.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
winged helix family two component transcriptional regulator
scnpilot_solids1_trim150_scaffold_900_curated_7
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7972..9489)
DNA (1518bp) protein (506aa)
hypothetical protein n=1 Tax=Gilvimarinus chinensis RepID=UPI000369EA8E
Uncharacterized protein {ECO:0000313|EMBL:AKC87077.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
beta-N-acetylhexosaminidase
scnpilot_solids1_trim150_scaffold_900_curated_8
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9586..10926)
DNA (1341bp) protein (447aa)
Prolidase {ECO:0000313|EMBL:EGP08491.1}; EC=3.4.13.9 {ECO:0000313|EMBL:EGP08491.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Prolidase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QKX2_9BRAD
amidohydrolase
scnpilot_solids1_trim150_scaffold_900_curated_9
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11032..12078)
DNA (1047bp) protein (349aa)
peptidase U61 LD-carboxypeptidase A; K01297 muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
Probable murein peptide carboxypeptidase n=1 Tax=Rheinheimera nanhaiensis E407-8 RepID=I1DTF7_9GAMM
Microcin C7 resistance protein MccF {ECO:0000313|EMBL:AKC87942.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
scnpilot_solids1_trim150_scaffold_900_curated_10
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12382..14004)
DNA (1623bp) protein (541aa)
diguanylate cyclase n=1 Tax=Acidovorax radicis RepID=UPI0002376974
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_solids1_trim150_scaffold_900_curated_11
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14187..17732)
DNA (3546bp) protein (1182aa)
NODE_51, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96002.1}; EC=5.4.99.2 {ECO:0000313|EMBL:KIQ96002.1};; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
methylmalonyl-CoA mutase (EC:5.4.99.2); K11942 methylmalonyl-CoA mutase [EC:5.4.99.2]
methylmalonyl-CoA mutase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002EF2F8B
scnpilot_solids1_trim150_scaffold_900_curated_12
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18016..19113
DNA (1098bp) protein (366aa)
glu/leu/phe/val dehydrogenase (EC:1.4.1.-); K00263 leucine dehydrogenase [EC:1.4.1.9]
Probable glu/leu/phe/val dehydrogenase protein n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2U9Q0_XANAP
Leucine dehydrogenase {ECO:0000313|EMBL:AHY58180.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
Displaying 12 items

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