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scnpilot_solids1_trim150_scaffold_842_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_842_curated_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..791)
DNA (789bp) protein (263aa)
Acylaminoacyl-peptidase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLJ8_9GAMM
Acylaminoacyl-peptidase {ECO:0000313|EMBL:EIL88089.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
xylanase
scnpilot_solids1_trim150_scaffold_842_curated_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

921..1745
DNA (825bp) protein (275aa)
2-keto-4-pentenoate hydratase; K02554 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
2-keto-4-pentenoate hydratase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLJ7_9GAMM
2-keto-4-pentenoate hydratase {ECO:0000313|EMBL:EIL88088.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_842_curated_3
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1782..2786
DNA (1005bp) protein (335aa)
C4-dicarboxylate ABC transporter n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000380E9E4
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:AHY60932.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
dctP; dicarboxylate transport system, periplasmic substate binding component
scnpilot_solids1_trim150_scaffold_842_curated_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2799..3317
DNA (519bp) protein (173aa)
Tripartite ATP-independent periplasmic transporter DctQ component n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLJ5_9GAMM
Tripartite ATP-independent periplasmic transporter DctQ component {ECO:0000313|EMBL:EIL88086.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
tripartite ATP-independent periplasmic transporter DctQ component
scnpilot_solids1_trim150_scaffold_842_curated_5
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3321..4604
DNA (1284bp) protein (428aa)
TRAP dicarboxylate transporter subunit DctM n=2 Tax=Stenotrophomonas maltophilia RepID=M5TVE2_STEMA
TRAP dicarboxylate transporter subunit DctM {ECO:0000313|EMBL:EZP42637.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
TRAP dicarboxylate transporter subunit DctM
scnpilot_solids1_trim150_scaffold_842_curated_6
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4791..5864
DNA (1074bp) protein (358aa)
LacI family transcription regulator n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D2E6F6
LacI family transcriptional regulator {ECO:0000313|EMBL:AHY60927.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
scnpilot_solids1_trim150_scaffold_842_curated_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6068..6823
DNA (756bp) protein (252aa)
2-deoxy-D-gluconate 3-dehydrogenase; K00065 2-deoxy-D-gluconate 3-dehydrogenase [EC:1.1.1.125]
Short chain dehydrogenase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLV8_9GAMM
Short chain dehydrogenase {ECO:0000313|EMBL:EIL88199.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_842_curated_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6894..7532
DNA (639bp) protein (213aa)
hypothetical protein; K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6]
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLV7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL88198.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_842_curated_9
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7662..8261
DNA (600bp) protein (200aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
folE; GTP cyclohydrolase I; K01495 GTP cyclohydrolase I [EC:3.5.4.16]
GTP cyclohydrolase I n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI000376B8EF
scnpilot_solids1_trim150_scaffold_842_curated_10
gamma proteobacterium IMCC1989, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8331..8708
DNA (378bp) protein (126aa)
membrane protein n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003B33903
Leukotriene C4 synthase like protein {ECO:0000313|EMBL:EGG94942.1}; TaxID=937772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales.;" source="gamma proteobacterium IMCC1989.;"
eicosanoid and glutathione metabolism membrane protein
scnpilot_solids1_trim150_scaffold_842_curated_11
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9028..11898)
DNA (2871bp) protein (957aa)
TonB-denpendent receptor n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KAM0_STEMA
TonB-dependent receptor {ECO:0000313|EMBL:KGM54708.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
scnpilot_solids1_trim150_scaffold_842_curated_12
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12054..12797)
DNA (744bp) protein (248aa)
short-chain dehydrogenase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002ED4A33
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADV28885.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_solids1_trim150_scaffold_842_curated_13
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12897..13673)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KUE9_STEMA
Membrane protein {ECO:0000313|EMBL:AHY61023.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein; K07090
scnpilot_solids1_trim150_scaffold_842_curated_14
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13862..14149
DNA (288bp) protein (96aa)
UPF0225 protein EPM1_1004 n=1 Tax=Stenotrophomonas maltophilia EPM1 RepID=M3GB80_STEMA
UPF0225 protein BW38_03997 {ECO:0000256|HAMAP-Rule:MF_00612}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein; K09858 SEC-C motif domain protein
scnpilot_solids1_trim150_scaffold_842_curated_15
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14187..15506
DNA (1320bp) protein (440aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EA07A7
Uncharacterized protein {ECO:0000313|EMBL:EQM87546.1}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_842_curated_16
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15506..16480
DNA (975bp) protein (325aa)
methyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002DCF69D
Methyltransferase {ECO:0000313|EMBL:AHY61027.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_842_curated_17
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16554..18713
DNA (2160bp) protein (720aa)
epimerase; K01792 glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
Epimerase n=1 Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CS37_STEMA
Epimerase {ECO:0000313|EMBL:AHY61028.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
scnpilot_solids1_trim150_scaffold_842_curated_18
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18756..19934)
DNA (1179bp) protein (393aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E2FAC8
Membrane protein {ECO:0000313|EMBL:AHY61030.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
benzoate transporter; K05782 benzoate membrane transport protein
Displaying 18 items

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