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scnpilot_solids1_trim150_scaffold_1403_curated_12

Organism: solids_Stenotrophomonas_1

near complete RP 51 / 55 MC: 4 BSCG 50 / 51 MC: 2 ASCG 12 / 38
Location: comp(12976..13395)

Top 3 Functional Annotations

Value Algorithm Source
30S ribosomal protein S4 n=11 Tax=Stenotrophomonas RepID=RS4_STRM5 similarity UNIREF
DB: UNIREF100
  • Identity: 95.7
  • Coverage: 139.0
  • Bit_score: 263
  • Evalue 1.10e-67
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.4
  • Coverage: 139.0
  • Bit_score: 264
  • Evalue 7.10e-68
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 similarity KEGG
DB: KEGG
  • Identity: 95.7
  • Coverage: 139.0
  • Bit_score: 263
  • Evalue 3.50e-68

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Taxonomy

Stenotrophomonas sp. RIT309 → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 420
GAGCGCCAGTTCCGCAACTACTACAAGAAGGCCTCGACCAAGAAGGGCAACACCGGCGAGAACCTGCTGCAGCTGCTGGAAACCCGCCTGGACAACGTCGTCTACCGCATGGGCTTCGCCGTGACCCGTCCGGCCGCGCGCCAGCTGGTCTCGCACCGCGGCGTCACCGTGAACGGCAAGTCGGTCAACCTGGCCTCGTACCAGGTCAAGGCCGGCGACGCGATCGCCCTGTCGGAAAAGGCTGCCAAGCAGCTGCGTGTCCAGGAAGCCCTGACCATCGCCGAACAGCATGACCTGAGCCCGTCGTGGGTGGAAGTCGATTCGAAGAAGTTCAGCGGCGTGTTCAAGGCCGTGCCGGATCGCGCCGACCTGCCGGCGGACATCAACGAAGCGCTGATCGTCGAGCTGTACTCGAAGTAA
PROTEIN sequence
Length: 140
ERQFRNYYKKASTKKGNTGENLLQLLETRLDNVVYRMGFAVTRPAARQLVSHRGVTVNGKSVNLASYQVKAGDAIALSEKAAKQLRVQEALTIAEQHDLSPSWVEVDSKKFSGVFKAVPDRADLPADINEALIVELYSK*