ggKbase home page

scnpilot_solids1_trim150_scaffold_1403_curated

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1403_curated_1
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33..1913)
DNA (1881bp) protein (627aa)
prpE; propionate--CoA ligase (EC:6.2.1.17); K01908 propionyl-CoA synthetase [EC:6.2.1.17]
Propionate--CoA ligase {ECO:0000313|EMBL:CCH11401.1}; EC=6.2.1.17 {ECO:0000313|EMBL:CCH11401.1};; TaxID=1163399 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia D457.;"
acetyl-CoA synthetase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003716C39
scnpilot_solids1_trim150_scaffold_1403_curated_2
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2020..2634)
DNA (615bp) protein (205aa)
pseudouridine synthase; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
Ribosomal large subunit pseudouridine synthase A n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L096_9GAMM
Ribosomal large subunit pseudouridine synthase A {ECO:0000313|EMBL:EED38108.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
scnpilot_solids1_trim150_scaffold_1403_curated_3
Xanthomonas vasicola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2766..3749)
DNA (984bp) protein (328aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01517, ECO:0000256|SAAS:SAAS00060476}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_01517, ECO:0000256|SAAS:SAAS00060476};; TaxID=1094180 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vasicola pv. vasculorum NCPPB 1381.;"
mdh; malate dehydrogenase (EC:1.1.1.37); K00024 malate dehydrogenase [EC:1.1.1.37]
Malate dehydrogenase n=2 Tax=Xanthomonas RepID=V7ZFY2_9XANT
scnpilot_solids1_trim150_scaffold_1403_curated_4
Xanthomonas gardneri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3873..4367)
DNA (495bp) protein (165aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=925777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas gardneri ATCC 19865.;"
peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8); K03768 peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
peptidylprolyl isomerase n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003A93858
scnpilot_solids1_trim150_scaffold_1403_curated_5
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4576..6405
DNA (1830bp) protein (610aa)
Putative translation elongation factor G n=1 Tax=Stenotrophomonas maltophilia RepID=Q8RJW2_STEMA
Putative translation elongation factor G {ECO:0000313|EMBL:CAC93615.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
typA; putative GTP-binding protein; K06207 GTP-binding protein
scnpilot_solids1_trim150_scaffold_1403_curated_6
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6411..6893
DNA (483bp) protein (161aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FD1C4E
Membrane protein {ECO:0000313|EMBL:AHY60131.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1403_curated_7
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6969..8567
DNA (1599bp) protein (533aa)
amidase (EC:3.5.1.4)
Amidase {ECO:0000313|EMBL:AEM50126.1}; EC=3.5.1.4 {ECO:0000313|EMBL:AEM50126.1};; Flags: Precursor;; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
Amidase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JZ73_STEMA
scnpilot_solids1_trim150_scaffold_1403_curated_8
Xanthomonas oryzae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9098..10483)
DNA (1386bp) protein (462aa)
3-deoxy-7-phosphoheptulonate synthase; K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
3-deoxy-7-phosphoheptulonate synthase n=1 Tax=Xanthomonas oryzae pv. oryzicola BLS256 RepID=G7TF95_9XANT
3-deoxy-7-phosphoheptulonate synthase {ECO:0000313|EMBL:AEQ95263.1}; TaxID=383407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas oryzae pv. oryzicola (strain BLS256).;"
scnpilot_solids1_trim150_scaffold_1403_curated_9
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10533..11048)
DNA (516bp) protein (172aa)
dsbB; disulfide bond formation protein B (EC:1.8.4.2); K03611 disulfide bond formation protein DsbB
dihydrolipoamide acetyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00035ECADC
Disulfide bond formation protein B {ECO:0000256|HAMAP-Rule:MF_00286}; Disulfide oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00286}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
scnpilot_solids1_trim150_scaffold_1403_curated_10
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11343..11729)
DNA (387bp) protein (129aa)
50S ribosomal protein L17 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003000815
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
scnpilot_solids1_trim150_scaffold_1403_curated_11
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11922..12920)
DNA (999bp) protein (333aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pse
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha n=1 Tax=Xanthomonadaceae RepID=UPI00029B01BE
scnpilot_solids1_trim150_scaffold_1403_curated_12
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12976..13395)
DNA (420bp) protein (140aa)
30S ribosomal protein S4 n=11 Tax=Stenotrophomonas RepID=RS4_STRM5
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
Displaying 12 items

View Taxonomy